Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 AC079834.2-201ENST00000609776 1949 ntBASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
CPSF4LA6NMK7 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4LA6NMK7 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4LA6NMK7 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4LA6NMK7 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4LA6NMK7 AC103834.1-201ENST00000520383 144 ntBASIC20.69■□□□□ 0.9
CPSF4LA6NMK7 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4LA6NMK7 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.69■□□□□ 0.9
CPSF4LA6NMK7 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4LA6NMK7 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4LA6NMK7 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CPSF4LA6NMK7 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CPSF4LA6NMK7 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CPSF4LA6NMK7 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.68■□□□□ 0.9
CPSF4LA6NMK7 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CPSF4LA6NMK7 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.68■□□□□ 0.9
CPSF4LA6NMK7 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CPSF4LA6NMK7 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CPSF4LA6NMK7 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CPSF4LA6NMK7 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
CPSF4LA6NMK7 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CPSF4LA6NMK7 AC079630.1-202ENST00000618127 1840 ntBASIC20.67■□□□□ 0.9
CPSF4LA6NMK7 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CPSF4LA6NMK7 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.67■□□□□ 0.9
CPSF4LA6NMK7 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.67■□□□□ 0.9
CPSF4LA6NMK7 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CPSF4LA6NMK7 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CPSF4LA6NMK7 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CPSF4LA6NMK7 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CPSF4LA6NMK7 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
CPSF4LA6NMK7 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CPSF4LA6NMK7 AL117328.2-201ENST00000624617 1940 ntBASIC20.66■□□□□ 0.9
CPSF4LA6NMK7 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPSF4LA6NMK7 YBX1P4-201ENST00000392794 808 ntBASIC20.66■□□□□ 0.9
CPSF4LA6NMK7 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CPSF4LA6NMK7 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPSF4LA6NMK7 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.66■□□□□ 0.9
CPSF4LA6NMK7 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPSF4LA6NMK7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.66■□□□□ 0.9
CPSF4LA6NMK7 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.66■□□□□ 0.9
CPSF4LA6NMK7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPSF4LA6NMK7 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CPSF4LA6NMK7 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CPSF4LA6NMK7 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.65■□□□□ 0.9
CPSF4LA6NMK7 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.65■□□□□ 0.9
CPSF4LA6NMK7 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CPSF4LA6NMK7 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.65■□□□□ 0.9
CPSF4LA6NMK7 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CPSF4LA6NMK7 AC103724.3-201ENST00000564481 992 ntBASIC20.65■□□□□ 0.9
CPSF4LA6NMK7 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CPSF4LA6NMK7 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CPSF4LA6NMK7 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CPSF4LA6NMK7 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CPSF4LA6NMK7 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.64■□□□□ 0.9
CPSF4LA6NMK7 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CPSF4LA6NMK7 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CPSF4LA6NMK7 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CPSF4LA6NMK7 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4LA6NMK7 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4LA6NMK7 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4LA6NMK7 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4LA6NMK7 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.64■□□□□ 0.89
CPSF4LA6NMK7 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.64■□□□□ 0.89
CPSF4LA6NMK7 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4LA6NMK7 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CPSF4LA6NMK7 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.64■□□□□ 0.89
CPSF4LA6NMK7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4LA6NMK7 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4LA6NMK7 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4LA6NMK7 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4LA6NMK7 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4LA6NMK7 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.63■□□□□ 0.89
CPSF4LA6NMK7 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4LA6NMK7 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.63■□□□□ 0.89
CPSF4LA6NMK7 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4LA6NMK7 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms