Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AL359845.1-201ENST00000458202 1648 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AC067930.6-201ENST00000623257 4947 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AC098935.1-201ENST00000446057 611 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 PFN2-206ENST00000461930 606 ntTSL 4 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 CCNC-217ENST00000523985 958 ntTSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 PHBP15-201ENST00000574228 665 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 MIR6756-201ENST00000616240 63 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AC007718.1-201ENST00000621078 280 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 YRDCP1-201ENST00000621419 643 ntBASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC14.38□□□□□ -0.11
SHROOM3Q8TF72 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 SHMT1P1-201ENST00000419974 1312 ntBASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 MARK2P16-201ENST00000605714 1723 ntBASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 NPM1P43-201ENST00000558669 786 ntBASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 AC148477.9-201ENST00000623974 539 ntBASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 AC061965.1-201ENST00000560524 1465 ntBASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHROOM3Q8TF72 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 AC005562.1-201ENST00000583030 3219 ntBASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 AL583805.1-201ENST00000391389 531 ntBASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 AL008707.1-201ENST00000422498 534 ntBASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 CMC1-204ENST00000423894 549 ntTSL 2 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 AC097065.1-201ENST00000425737 517 ntBASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms