Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 ABCD1P2-201ENST00000429313 1601 ntBASIC13.69□□□□□ -0.22
PCDH1Q08174 LINC01165-201ENST00000445190 1623 ntBASIC13.69□□□□□ -0.22
PCDH1Q08174 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
PCDH1Q08174 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC13.69□□□□□ -0.22
PCDH1Q08174 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.69□□□□□ -0.22
PCDH1Q08174 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
PCDH1Q08174 SNORA50C-201ENST00000408535 133 ntBASIC13.69□□□□□ -0.22
PCDH1Q08174 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.69□□□□□ -0.22
PCDH1Q08174 PARVG-202ENST00000415224 999 ntTSL 2 BASIC13.69□□□□□ -0.22
PCDH1Q08174 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC13.69□□□□□ -0.22
PCDH1Q08174 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC13.69□□□□□ -0.22
PCDH1Q08174 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
PCDH1Q08174 SNORA50.1-201ENST00000628590 135 ntBASIC13.69□□□□□ -0.22
PCDH1Q08174 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC13.69□□□□□ -0.22
PCDH1Q08174 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.69□□□□□ -0.22
PCDH1Q08174 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.69□□□□□ -0.22
PCDH1Q08174 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 SALL4P6-201ENST00000429385 1691 ntBASIC13.69□□□□□ -0.22
PCDH1Q08174 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC13.69□□□□□ -0.22
PCDH1Q08174 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC13.69□□□□□ -0.22
PCDH1Q08174 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PCDH1Q08174 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC13.68□□□□□ -0.22
PCDH1Q08174 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 AC009474.1-201ENST00000455096 1565 ntBASIC13.68□□□□□ -0.22
PCDH1Q08174 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
PCDH1Q08174 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
PCDH1Q08174 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 LBH-202ENST00000401506 485 ntTSL 3 BASIC13.68□□□□□ -0.22
PCDH1Q08174 MIR1908-201ENST00000410394 80 ntBASIC13.68□□□□□ -0.22
PCDH1Q08174 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC13.68□□□□□ -0.22
PCDH1Q08174 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.68□□□□□ -0.22
PCDH1Q08174 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.68□□□□□ -0.22
PCDH1Q08174 AC125604.1-201ENST00000496255 707 ntBASIC13.68□□□□□ -0.22
PCDH1Q08174 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
PCDH1Q08174 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC13.68□□□□□ -0.22
PCDH1Q08174 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC13.68□□□□□ -0.22
PCDH1Q08174 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC13.68□□□□□ -0.22
PCDH1Q08174 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC13.68□□□□□ -0.22
PCDH1Q08174 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.68□□□□□ -0.22
PCDH1Q08174 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC13.68□□□□□ -0.22
PCDH1Q08174 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC13.68□□□□□ -0.22
PCDH1Q08174 AL022334.2-201ENST00000610000 484 ntBASIC13.68□□□□□ -0.22
PCDH1Q08174 AC091271.1-201ENST00000611877 1162 ntBASIC13.68□□□□□ -0.22
PCDH1Q08174 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC13.68□□□□□ -0.22
PCDH1Q08174 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.68□□□□□ -0.22
PCDH1Q08174 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
PCDH1Q08174 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 AL359845.1-201ENST00000458202 1648 ntBASIC13.68□□□□□ -0.22
PCDH1Q08174 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PCDH1Q08174 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.68□□□□□ -0.22
PCDH1Q08174 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
PCDH1Q08174 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PCDH1Q08174 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.67□□□□□ -0.22
PCDH1Q08174 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC13.67□□□□□ -0.22
PCDH1Q08174 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCDH1Q08174 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCDH1Q08174 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
PCDH1Q08174 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCDH1Q08174 GALC-206ENST00000544807 2528 ntTSL 2 BASIC13.67□□□□□ -0.22
PCDH1Q08174 AC135782.3-201ENST00000562782 2105 ntBASIC13.67□□□□□ -0.22
PCDH1Q08174 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC13.67□□□□□ -0.22
PCDH1Q08174 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCDH1Q08174 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
PCDH1Q08174 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms