Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.85□□□□□ -0.03
HDAC4P56524 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC14.85□□□□□ -0.03
HDAC4P56524 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC14.85□□□□□ -0.03
HDAC4P56524 MAPT-IT1-201ENST00000624111 3016 ntBASIC14.85□□□□□ -0.03
HDAC4P56524 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.85□□□□□ -0.03
HDAC4P56524 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
HDAC4P56524 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
HDAC4P56524 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 TUBBP5-203ENST00000508529 1334 ntBASIC14.85□□□□□ -0.03
HDAC4P56524 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HDAC4P56524 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.85□□□□□ -0.03
HDAC4P56524 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.85□□□□□ -0.03
HDAC4P56524 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.85□□□□□ -0.03
HDAC4P56524 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
HDAC4P56524 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC14.84□□□□□ -0.03
HDAC4P56524 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
HDAC4P56524 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.84□□□□□ -0.03
HDAC4P56524 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC14.84□□□□□ -0.03
HDAC4P56524 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
HDAC4P56524 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
HDAC4P56524 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HDAC4P56524 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC14.84□□□□□ -0.03
HDAC4P56524 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
HDAC4P56524 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
HDAC4P56524 LBH-202ENST00000401506 485 ntTSL 3 BASIC14.84□□□□□ -0.03
HDAC4P56524 GPAA1P2-201ENST00000417923 928 ntBASIC14.84□□□□□ -0.03
HDAC4P56524 AC011742.3-201ENST00000439053 820 ntBASIC14.84□□□□□ -0.03
HDAC4P56524 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC14.84□□□□□ -0.03
HDAC4P56524 BX284668.4-201ENST00000453917 508 ntBASIC14.84□□□□□ -0.03
HDAC4P56524 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 SDHD-202ENST00000525291 790 ntTSL 3 BASIC14.84□□□□□ -0.03
HDAC4P56524 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC14.84□□□□□ -0.03
HDAC4P56524 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC14.84□□□□□ -0.03
HDAC4P56524 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.84□□□□□ -0.03
HDAC4P56524 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.84□□□□□ -0.03
HDAC4P56524 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC14.84□□□□□ -0.03
HDAC4P56524 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 GOLGA8IP-202ENST00000611635 2100 ntBASIC14.84□□□□□ -0.03
HDAC4P56524 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 AL139385.1-201ENST00000611744 3272 ntBASIC14.84□□□□□ -0.03
HDAC4P56524 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
HDAC4P56524 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HDAC4P56524 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HDAC4P56524 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC4P56524 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC4P56524 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC4P56524 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC4P56524 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC4P56524 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HDAC4P56524 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.83□□□□□ -0.04
HDAC4P56524 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC14.83□□□□□ -0.04
HDAC4P56524 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC14.83□□□□□ -0.04
HDAC4P56524 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
HDAC4P56524 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC14.83□□□□□ -0.04
HDAC4P56524 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.83□□□□□ -0.04
HDAC4P56524 CICP8-201ENST00000455800 2813 ntBASIC14.83□□□□□ -0.04
HDAC4P56524 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
HDAC4P56524 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
HDAC4P56524 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 RPS9P1-201ENST00000419943 583 ntBASIC14.83□□□□□ -0.04
HDAC4P56524 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC14.83□□□□□ -0.04
HDAC4P56524 KRT8P13-201ENST00000463294 1010 ntBASIC14.83□□□□□ -0.04
HDAC4P56524 RHEB-207ENST00000496004 744 ntTSL 2 BASIC14.83□□□□□ -0.04
HDAC4P56524 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.83□□□□□ -0.04
HDAC4P56524 SKA2-205ENST00000580541 689 ntTSL 3 BASIC14.83□□□□□ -0.04
HDAC4P56524 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC14.83□□□□□ -0.04
HDAC4P56524 AC020914.3-201ENST00000594712 304 ntBASIC14.83□□□□□ -0.04
HDAC4P56524 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC14.83□□□□□ -0.04
HDAC4P56524 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
HDAC4P56524 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HDAC4P56524 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.83□□□□□ -0.04
HDAC4P56524 HAL-202ENST00000538703 2637 ntTSL 2 BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 146.5 ms