Protein–RNA interactions for Protein: P39059

COL15A1, Collagen alpha-1(XV) chain, humanhuman

Predictions only

Length 1,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL15A1P39059 AC139713.2-207ENST00000641556 1292 ntBASIC17.69■□□□□ 0.42
COL15A1P39059 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL15A1P39059 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL15A1P39059 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
COL15A1P39059 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL15A1P39059 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL15A1P39059 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL15A1P39059 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL15A1P39059 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC17.69■□□□□ 0.42
COL15A1P39059 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
COL15A1P39059 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL15A1P39059 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL15A1P39059 AL513477.1-201ENST00000602865 2407 ntBASIC17.69■□□□□ 0.42
COL15A1P39059 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL15A1P39059 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL15A1P39059 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC17.69■□□□□ 0.42
COL15A1P39059 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL15A1P39059 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC17.69■□□□□ 0.42
COL15A1P39059 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL15A1P39059 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL15A1P39059 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL15A1P39059 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL15A1P39059 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL15A1P39059 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
COL15A1P39059 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL15A1P39059 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC17.68■□□□□ 0.42
COL15A1P39059 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL15A1P39059 PGAM1P11-201ENST00000416729 680 ntBASIC17.68■□□□□ 0.42
COL15A1P39059 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC17.68■□□□□ 0.42
COL15A1P39059 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC17.68■□□□□ 0.42
COL15A1P39059 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
COL15A1P39059 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC17.68■□□□□ 0.42
COL15A1P39059 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
COL15A1P39059 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC17.68■□□□□ 0.42
COL15A1P39059 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL15A1P39059 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL15A1P39059 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
COL15A1P39059 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL15A1P39059 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL15A1P39059 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC17.68■□□□□ 0.42
COL15A1P39059 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL15A1P39059 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL15A1P39059 AC092115.1-201ENST00000566277 1402 ntBASIC17.68■□□□□ 0.42
COL15A1P39059 USP39-207ENST00000450066 2086 ntTSL 2 BASIC17.68■□□□□ 0.42
COL15A1P39059 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
COL15A1P39059 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL15A1P39059 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
COL15A1P39059 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL15A1P39059 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
COL15A1P39059 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL15A1P39059 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL15A1P39059 AL009178.2-201ENST00000597278 2719 ntBASIC17.68■□□□□ 0.42
COL15A1P39059 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
COL15A1P39059 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC17.67■□□□□ 0.42
COL15A1P39059 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC17.67■□□□□ 0.42
COL15A1P39059 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC17.67■□□□□ 0.42
COL15A1P39059 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC17.67■□□□□ 0.42
COL15A1P39059 NALT1-202ENST00000450304 437 ntTSL 3 BASIC17.67■□□□□ 0.42
COL15A1P39059 GULOP-201ENST00000454030 748 ntBASIC17.67■□□□□ 0.42
COL15A1P39059 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC17.67■□□□□ 0.42
COL15A1P39059 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC17.67■□□□□ 0.42
COL15A1P39059 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC17.67■□□□□ 0.42
COL15A1P39059 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC17.67■□□□□ 0.42
COL15A1P39059 URAHP-205ENST00000610227 398 ntBASIC17.67■□□□□ 0.42
COL15A1P39059 GGNBP1-204ENST00000613113 887 ntBASIC17.67■□□□□ 0.42
COL15A1P39059 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
COL15A1P39059 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
COL15A1P39059 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 DDC-213ENST00000617822 1809 ntTSL 3 BASIC17.67■□□□□ 0.42
COL15A1P39059 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC17.67■□□□□ 0.42
COL15A1P39059 ENPP7P8-202ENST00000527856 1345 ntBASIC17.67■□□□□ 0.42
COL15A1P39059 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC17.67■□□□□ 0.42
COL15A1P39059 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL15A1P39059 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.66■□□□□ 0.42
COL15A1P39059 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL15A1P39059 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL15A1P39059 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
COL15A1P39059 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
COL15A1P39059 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC17.66■□□□□ 0.42
COL15A1P39059 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL15A1P39059 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC17.66■□□□□ 0.42
COL15A1P39059 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC17.66■□□□□ 0.42
COL15A1P39059 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
COL15A1P39059 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC17.66■□□□□ 0.42
COL15A1P39059 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.66■□□□□ 0.42
COL15A1P39059 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms