Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 KRT18P66-201ENST00000452970 1269 ntBASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 MIR3147-201ENST00000577811 66 ntBASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 KRT17P5-201ENST00000332088 839 ntBASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 AP000358.1-201ENST00000456260 156 ntBASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 RPL13AP19-201ENST00000434320 584 ntBASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 FTH1P22-201ENST00000456305 520 ntBASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC14.42□□□□□ -0.1
SHROOM3Q8TF72 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHROOM3Q8TF72 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms