RNA–Protein interactions for RNA: ENST00000378300.9

TPM2-204, Transcript of tropomyosin 2, humanhuman

TSL 3 BASIC

Gene TPM2, Length 1,771 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM2-204ENST00000378300 NISCHQ9Y2I1 1504 aa32.74■■■□□ 2.83
TPM2-204ENST00000378300 CCDC180Q9P1Z9 1646 aa28.68■■■□□ 2.18
TPM2-204ENST00000378300 ABCC9O60706 1549 aa27.52■■■□□ 2
TPM2-204ENST00000378300 ZCCHC6Q5VYS8 1495 aaKnown RBP27.43■■□□□ 1.98
TPM2-204ENST00000378300 DCAF8L2P0C7V8 631 aa27.2■■□□□ 1.94
TPM2-204ENST00000378300 DCAF1Q9Y4B6 1507 aa27.03■■□□□ 1.92
TPM2-204ENST00000378300 MYO15BQ96JP2 1530 aa26.83■■□□□ 1.89
TPM2-204ENST00000378300 NACADO15069 1562 aa26.8■■□□□ 1.88
TPM2-204ENST00000378300 RB1CC1Q8TDY2 1594 aa26.66■■□□□ 1.86
TPM2-204ENST00000378300 SHROOM4Q9ULL8 1493 aa26.53■■□□□ 1.84
TPM2-204ENST00000378300 SCRIBQ14160 1630 aa26.39■■□□□ 1.81
TPM2-204ENST00000378300 UNC13AQ9UPW8 1703 aa26.16■■□□□ 1.78
TPM2-204ENST00000378300 BICRAQ9NZM4 1560 aa25.92■■□□□ 1.74
TPM2-204ENST00000378300 PABPN1Q86U42 306 aaKnown RBP eCLIP25.9■■□□□ 1.744e-7■■■□□ 16.3
TPM2-204ENST00000378300 CECR2Q9BXF3 1484 aa25.52■■□□□ 1.68
TPM2-204ENST00000378300 SUPT5HO00267 1087 aaKnown RBP25.32■■□□□ 1.64
TPM2-204ENST00000378300 MROH2BQ7Z745 1585 aa25.31■■□□□ 1.64
TPM2-204ENST00000378300 BAZ1AQ9NRL2 1556 aaPredicted RBP25.29■■□□□ 1.64
TPM2-204ENST00000378300 RSF1Q96T23 1441 aaPredicted RBP25.28■■□□□ 1.64
TPM2-204ENST00000378300 SMARCA4P51532 1647 aa25.24■■□□□ 1.63
TPM2-204ENST00000378300 EIF4G1Q04637 1599 aaKnown RBP25.15■■□□□ 1.62
TPM2-204ENST00000378300 WIZO95785 1651 aa25.09■■□□□ 1.61
TPM2-204ENST00000378300 PEG3Q9GZU2 1588 aa24.93■■□□□ 1.58
TPM2-204ENST00000378300 ATAD2BQ9ULI0 1458 aa24.92■■□□□ 1.58
TPM2-204ENST00000378300 CC2D2AQ9P2K1 1620 aa24.88■■□□□ 1.57
TPM2-204ENST00000378300 SMARCA2P51531 1590 aa24.86■■□□□ 1.57
TPM2-204ENST00000378300 TOP2AP11388 1531 aaKnown RBP24.78■■□□□ 1.56
TPM2-204ENST00000378300 NCAPD3P42695 1498 aa24.76■■□□□ 1.55
TPM2-204ENST00000378300 BAZ1BQ9UIG0 1483 aaKnown RBP24.76■■□□□ 1.55
TPM2-204ENST00000378300 HMGXB3Q12766 1538 aa24.68■■□□□ 1.54
TPM2-204ENST00000378300 DNAJC5BQ9UF47 199 aa24.65■■□□□ 1.54
TPM2-204ENST00000378300 CCDC88BA6NC98 1476 aa24.55■■□□□ 1.52
TPM2-204ENST00000378300 CFTRP13569 1480 aa24.11■■□□□ 1.45
TPM2-204ENST00000378300 CADPSQ9ULU8 1353 aa24.1■■□□□ 1.45
TPM2-204ENST00000378300 NESP48681 1621 aa24.07■■□□□ 1.44
TPM2-204ENST00000378300 CHIC1Q5VXU3 224 aa24.03■■□□□ 1.44
TPM2-204ENST00000378300 LAMC3Q9Y6N6 1575 aa23.96■■□□□ 1.43
TPM2-204ENST00000378300 ABCC8Q09428 1581 aa23.95■■□□□ 1.42
TPM2-204ENST00000378300 PRDM2Q13029 1718 aa23.94■■□□□ 1.42
TPM2-204ENST00000378300 FANCD2Q9BXW9 1451 aa23.84■■□□□ 1.41
TPM2-204ENST00000378300 WRNQ14191 1432 aaPredicted RBP eCLIP23.79■■□□□ 1.4
TPM2-204ENST00000378300 TRIM41Q8WV44 630 aa23.79■■□□□ 1.4
TPM2-204ENST00000378300 PDS5BQ9NTI5 1447 aa23.78■■□□□ 1.4
TPM2-204ENST00000378300 KIF21AQ7Z4S6 1674 aa23.74■■□□□ 1.39
TPM2-204ENST00000378300 SYNJ1O43426 1573 aa23.74■■□□□ 1.39
TPM2-204ENST00000378300 CEP164Q9UPV0 1460 aa23.71■■□□□ 1.39
TPM2-204ENST00000378300 CUX1P39880 1505 aa23.68■■□□□ 1.38
TPM2-204ENST00000378300 TOP2BQ02880 1626 aa23.63■■□□□ 1.37
TPM2-204ENST00000378300 BIVM-ERCC5R4GMW8 1640 aa23.6■■□□□ 1.37
TPM2-204ENST00000378300 URB2Q14146 1524 aaKnown RBP23.59■■□□□ 1.37
TPM2-204ENST00000378300 ERCC6Q03468 1493 aa23.59■■□□□ 1.37
TPM2-204ENST00000378300 TOPBP1Q92547 1522 aa23.55■■□□□ 1.36
TPM2-204ENST00000378300 DNMBPQ6XZF7 1577 aa23.54■■□□□ 1.36
TPM2-204ENST00000378300 MRC2Q9UBG0 1479 aa23.51■■□□□ 1.35
TPM2-204ENST00000378300 FGD5Q6ZNL6 1462 aa23.47■■□□□ 1.35
TPM2-204ENST00000378300 THOC2Q8NI27 1593 aaKnown RBP23.43■■□□□ 1.34
TPM2-204ENST00000378300 POLA1P09884 1462 aaPredicted RBP23.41■■□□□ 1.34
TPM2-204ENST00000378300 SOGA1O94964 1423 aa23.41■■□□□ 1.34
TPM2-204ENST00000378300 WDR62O43379 1518 aa23.41■■□□□ 1.34
TPM2-204ENST00000378300 FAM9AQ8IZU1 332 aaPredicted RBP23.4■■□□□ 1.34
TPM2-204ENST00000378300 RUSC2Q8N2Y8 1516 aa23.37■■□□□ 1.33
TPM2-204ENST00000378300 RAD54L2Q9Y4B4 1467 aa23.36■■□□□ 1.33
TPM2-204ENST00000378300 CUX2O14529 1486 aa23.28■■□□□ 1.32
TPM2-204ENST00000378300 ABCA10Q8WWZ4 1543 aa23.24■■□□□ 1.31
TPM2-204ENST00000378300 TARBP1Q13395 1621 aaKnown RBP23.23■■□□□ 1.31
TPM2-204ENST00000378300 WDR97A6NE52 1622 aa23.2■■□□□ 1.31
TPM2-204ENST00000378300 EEA1Q15075 1411 aa23.2■■□□□ 1.3
TPM2-204ENST00000378300 KIF27Q86VH2 1401 aa23.2■■□□□ 1.3
TPM2-204ENST00000378300 CSRNP3Q8WYN3 585 aa23.17■■□□□ 1.3
TPM2-204ENST00000378300 IFT140Q96RY7 1462 aa23.16■■□□□ 1.3
TPM2-204ENST00000378300 TDRD9Q8NDG6 1382 aaKnown RBP23.16■■□□□ 1.3
TPM2-204ENST00000378300 LOC105371045A0A1W2PR82 267 aa23.14■■□□□ 1.29
TPM2-204ENST00000378300 EHMT2Q96KQ7 1210 aa23.12■■□□□ 1.29
TPM2-204ENST00000378300 ZNF608Q9ULD9 1512 aaPredicted RBP23.11■■□□□ 1.29
TPM2-204ENST00000378300 ABCA5Q8WWZ7 1642 aa23.08■■□□□ 1.29
TPM2-204ENST00000378300 AQRO60306 1485 aaKnown RBP eCLIP23.08■■□□□ 1.29
TPM2-204ENST00000378300 IGF1RP08069 1367 aa23.07■■□□□ 1.28
TPM2-204ENST00000378300 GAPVD1Q14C86 1478 aa23.05■■□□□ 1.28
TPM2-204ENST00000378300 EIF4G3O43432 1585 aaKnown RBP22.99■■□□□ 1.27
TPM2-204ENST00000378300 PRXQ9BXM0 1461 aa22.97■■□□□ 1.27
TPM2-204ENST00000378300 KIF21BO75037 1637 aa22.96■■□□□ 1.27
TPM2-204ENST00000378300 PBRM1Q86U86 1689 aa22.95■■□□□ 1.27
TPM2-204ENST00000378300 RAPGEF2Q9Y4G8 1499 aa22.95■■□□□ 1.26
TPM2-204ENST00000378300 ERICH3Q5RHP9 1530 aa22.95■■□□□ 1.26
TPM2-204ENST00000378300 CARMIL1Q5VZK9 1371 aa22.92■■□□□ 1.26
TPM2-204ENST00000378300 GRIN2BQ13224 1484 aa22.92■■□□□ 1.26
TPM2-204ENST00000378300 GOLGA3Q08378 1498 aa22.9■■□□□ 1.26
TPM2-204ENST00000378300 CUL7Q14999 1698 aa22.88■■□□□ 1.25
TPM2-204ENST00000378300 UBTFP17480 764 aaKnown RBP22.84■■□□□ 1.25
TPM2-204ENST00000378300 SNAPC4Q5SXM2 1469 aa22.83■■□□□ 1.25
TPM2-204ENST00000378300 ADAMTS12P58397 1594 aa22.81■■□□□ 1.24
TPM2-204ENST00000378300 FHAD1B1AJZ9 1412 aa22.78■■□□□ 1.24
TPM2-204ENST00000378300 TNIKQ9UKE5 1360 aa22.76■■□□□ 1.23
TPM2-204ENST00000378300 MAGI1Q96QZ7 1491 aaPredicted RBP22.76■■□□□ 1.23
TPM2-204ENST00000378300 SYNJ2O15056 1496 aa22.68■■□□□ 1.22
TPM2-204ENST00000378300 FBLN2P98095 1184 aa22.67■■□□□ 1.22
TPM2-204ENST00000378300 CHMP7Q8WUX9 453 aaPredicted RBP22.66■■□□□ 1.22
TPM2-204ENST00000378300 GRIN2AQ12879 1464 aa22.65■■□□□ 1.22
TPM2-204ENST00000378300 RANGAP1P46060 587 aaPredicted RBP22.64■■□□□ 1.22
TPM2-204ENST00000378300 CEP162Q5TB80 1403 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 437 ms