Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC106872.11-201ENST00000605838 421 ntBASIC13.21□□□□□ -0.29
RNF4P78317 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC13.21□□□□□ -0.29
RNF4P78317 CDK7-214ENST00000626796 358 ntTSL 5 BASIC13.21□□□□□ -0.29
RNF4P78317 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC13.21□□□□□ -0.29
RNF4P78317 AC006453.1-201ENST00000636037 1257 ntBASIC13.21□□□□□ -0.29
RNF4P78317 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RNF4P78317 AC026748.1-201ENST00000624349 3251 ntBASIC13.21□□□□□ -0.29
RNF4P78317 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC13.21□□□□□ -0.29
RNF4P78317 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RNF4P78317 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC13.21□□□□□ -0.3
RNF4P78317 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RNF4P78317 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RNF4P78317 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RNF4P78317 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RNF4P78317 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RNF4P78317 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
RNF4P78317 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RNF4P78317 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC13.2□□□□□ -0.3
RNF4P78317 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.2□□□□□ -0.3
RNF4P78317 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC13.2□□□□□ -0.3
RNF4P78317 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC13.2□□□□□ -0.3
RNF4P78317 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
RNF4P78317 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.2□□□□□ -0.3
RNF4P78317 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC13.2□□□□□ -0.3
RNF4P78317 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.2□□□□□ -0.3
RNF4P78317 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
RNF4P78317 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 HMGA1P1-201ENST00000415560 1062 ntBASIC13.2□□□□□ -0.3
RNF4P78317 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC13.2□□□□□ -0.3
RNF4P78317 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 NAGK-204ENST00000443872 878 ntTSL 3 BASIC13.2□□□□□ -0.3
RNF4P78317 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC13.2□□□□□ -0.3
RNF4P78317 AC017007.3-201ENST00000479865 435 ntBASIC13.2□□□□□ -0.3
RNF4P78317 RN7SL67P-201ENST00000492147 296 ntBASIC13.2□□□□□ -0.3
RNF4P78317 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
RNF4P78317 ALG1L13P-202ENST00000519320 584 ntBASIC13.2□□□□□ -0.3
RNF4P78317 AC105129.2-201ENST00000559536 390 ntBASIC13.2□□□□□ -0.3
RNF4P78317 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
RNF4P78317 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC13.2□□□□□ -0.3
RNF4P78317 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
RNF4P78317 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
RNF4P78317 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
RNF4P78317 AC107918.4-201ENST00000641966 3141 ntBASIC13.2□□□□□ -0.3
RNF4P78317 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.2□□□□□ -0.3
RNF4P78317 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
RNF4P78317 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.2□□□□□ -0.3
RNF4P78317 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
RNF4P78317 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
RNF4P78317 KRT8P31-201ENST00000504812 1408 ntBASIC13.2□□□□□ -0.3
RNF4P78317 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC13.2□□□□□ -0.3
RNF4P78317 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
RNF4P78317 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.2□□□□□ -0.3
RNF4P78317 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.2□□□□□ -0.3
RNF4P78317 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
RNF4P78317 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
RNF4P78317 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
RNF4P78317 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
RNF4P78317 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
RNF4P78317 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
RNF4P78317 AL590824.1-201ENST00000403828 1349 ntBASIC13.19□□□□□ -0.3
RNF4P78317 SHMT1P1-201ENST00000419974 1312 ntBASIC13.19□□□□□ -0.3
RNF4P78317 LINC01230-201ENST00000625222 3017 ntBASIC13.19□□□□□ -0.3
RNF4P78317 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
RNF4P78317 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
RNF4P78317 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
RNF4P78317 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC13.19□□□□□ -0.3
RNF4P78317 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 RPL13AP3-202ENST00000494676 1473 ntBASIC13.19□□□□□ -0.3
RNF4P78317 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
RNF4P78317 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
RNF4P78317 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms