RNA–Protein interactions for RNA: ENST00000405954.1

DUSP28-202, Transcript of dual specificity phosphatase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DUSP28, Length 3,461 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DUSP28-202ENST00000405954 NISCHQ9Y2I1 1504 aa25.48■■□□□ 1.67
DUSP28-202ENST00000405954 PELP1Q8IZL8 1130 aaKnown RBP23.8■■□□□ 1.4
DUSP28-202ENST00000405954 HRCP23327 699 aa23.41■■□□□ 1.34
DUSP28-202ENST00000405954 PPARGC1BQ86YN6 1023 aaKnown RBP23.2■■□□□ 1.31
DUSP28-202ENST00000405954 PCGF6Q9BYE7 350 aa23.17■■□□□ 1.3
DUSP28-202ENST00000405954 MYT1Q01538 1121 aa23.12■■□□□ 1.29
DUSP28-202ENST00000405954 SHROOM4Q9ULL8 1493 aa23.09■■□□□ 1.29
DUSP28-202ENST00000405954 SUPT5HO00267 1087 aaKnown RBP22.72■■□□□ 1.23
DUSP28-202ENST00000405954 SCAF1Q9H7N4 1312 aaKnown RBP22.51■■□□□ 1.19
DUSP28-202ENST00000405954 DCAF8L2P0C7V8 631 aa22.35■■□□□ 1.17
DUSP28-202ENST00000405954 CENPBP07199 599 aaPredicted RBP22.03■■□□□ 1.12
DUSP28-202ENST00000405954 GTF3C3Q9Y5Q9 886 aa22.02■■□□□ 1.12
DUSP28-202ENST00000405954 ZEB1P37275 1124 aaPredicted RBP22.01■■□□□ 1.11
DUSP28-202ENST00000405954 ACIN1Q9UKV3 1341 aaKnown RBP21.9■■□□□ 1.1
DUSP28-202ENST00000405954 TRIM26Q12899 539 aaPredicted RBP21.88■■□□□ 1.09
DUSP28-202ENST00000405954 NEUROD1Q13562 356 aa21.83■■□□□ 1.08
DUSP28-202ENST00000405954 MYO15BQ96JP2 1530 aa21.82■■□□□ 1.08
DUSP28-202ENST00000405954 CHIC1Q5VXU3 224 aa21.74■■□□□ 1.07
DUSP28-202ENST00000405954 LOC105371045A0A1W2PR82 267 aa21.7■■□□□ 1.06
DUSP28-202ENST00000405954 YTHDC1Q96MU7 727 aaKnown RBP21.7■■□□□ 1.06
DUSP28-202ENST00000405954 TTBK1Q5TCY1 1321 aaPredicted RBP21.61■■□□□ 1.05
DUSP28-202ENST00000405954 ZCCHC6Q5VYS8 1495 aaKnown RBP21.52■■□□□ 1.04
DUSP28-202ENST00000405954 BCL11AQ9H165 835 aa21.52■■□□□ 1.04
DUSP28-202ENST00000405954 EHMT2Q96KQ7 1210 aa21.49■■□□□ 1.03
DUSP28-202ENST00000405954 DIEXFQ68CQ4 756 aaKnown RBP21.43■■□□□ 1.02
DUSP28-202ENST00000405954 CCER1Q8TC90 406 aaPredicted RBP21.41■■□□□ 1.02
DUSP28-202ENST00000405954 DCAF1Q9Y4B6 1507 aa21.21■□□□□ 0.99
DUSP28-202ENST00000405954 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.21■□□□□ 0.99
DUSP28-202ENST00000405954 FAM9AQ8IZU1 332 aaPredicted RBP21.19■□□□□ 0.98
DUSP28-202ENST00000405954 ABCC9O60706 1549 aa21.11■□□□□ 0.97
DUSP28-202ENST00000405954 CCDC180Q9P1Z9 1646 aa21.07■□□□□ 0.96
DUSP28-202ENST00000405954 ANP32EQ9BTT0 268 aa21.06■□□□□ 0.96
DUSP28-202ENST00000405954 PRKCSHP14314 528 aaPredicted RBP20.98■□□□□ 0.95
DUSP28-202ENST00000405954 CSRNP3Q8WYN3 585 aa20.88■□□□□ 0.93
DUSP28-202ENST00000405954 ERICH6Q7L0X2 663 aa20.86■□□□□ 0.93
DUSP28-202ENST00000405954 TRIM41Q8WV44 630 aa20.76■□□□□ 0.91
DUSP28-202ENST00000405954 BCANQ96GW7 911 aa20.72■□□□□ 0.91
DUSP28-202ENST00000405954 ZNF316A6NFI3 1004 aaPredicted RBP20.7■□□□□ 0.9
DUSP28-202ENST00000405954 MIER1Q8N108 512 aa20.66■□□□□ 0.9
DUSP28-202ENST00000405954 SCRIBQ14160 1630 aa20.66■□□□□ 0.9
DUSP28-202ENST00000405954 TSHZ2Q9NRE2 1034 aa20.55■□□□□ 0.88
DUSP28-202ENST00000405954 SUPT16HQ9Y5B9 1047 aaKnown RBP20.52■□□□□ 0.88
DUSP28-202ENST00000405954 RSF1Q96T23 1441 aaPredicted RBP20.47■□□□□ 0.87
DUSP28-202ENST00000405954 RB1CC1Q8TDY2 1594 aa20.46■□□□□ 0.87
DUSP28-202ENST00000405954 NEFLP07196 543 aa20.43■□□□□ 0.86
DUSP28-202ENST00000405954 PABPN1Q86U42 306 aaKnown RBP eCLIP20.32■□□□□ 0.84
DUSP28-202ENST00000405954 CLSPNQ9HAW4 1339 aa20.31■□□□□ 0.84
DUSP28-202ENST00000405954 CECR2Q9BXF3 1484 aa20.29■□□□□ 0.84
DUSP28-202ENST00000405954 FKBP8Q14318 412 aa20.26■□□□□ 0.83
DUSP28-202ENST00000405954 HNRNPUL2Q1KMD3 747 aaKnown RBP20.21■□□□□ 0.83
DUSP28-202ENST00000405954 ITGAEP38570 1179 aa20.19■□□□□ 0.82
DUSP28-202ENST00000405954 ANO8Q9HCE9 1232 aaPredicted RBP20.19■□□□□ 0.82
DUSP28-202ENST00000405954 RBM19Q9Y4C8 960 aaKnown RBP20.18■□□□□ 0.82
DUSP28-202ENST00000405954 CCDC136Q96JN2 1154 aa20.1■□□□□ 0.81
DUSP28-202ENST00000405954 MROH2BQ7Z745 1585 aa20.1■□□□□ 0.81
DUSP28-202ENST00000405954 RANGAP1P46060 587 aaPredicted RBP20.07■□□□□ 0.8
DUSP28-202ENST00000405954 DEKP35659 375 aaKnown RBP20.06■□□□□ 0.8
DUSP28-202ENST00000405954 NBR1Q14596 966 aa20.05■□□□□ 0.8
DUSP28-202ENST00000405954 WIZO95785 1651 aa20.05■□□□□ 0.8
DUSP28-202ENST00000405954 EIF5BO60841 1220 aaKnown RBP20.03■□□□□ 0.8
DUSP28-202ENST00000405954 RTN4Q9NQC3 1192 aaKnown RBP20.01■□□□□ 0.79
DUSP28-202ENST00000405954 RTL5Q5HYW3 569 aaPredicted RBP19.98■□□□□ 0.79
DUSP28-202ENST00000405954 CDK11AQ9UQ88 783 aaPredicted RBP19.97■□□□□ 0.79
DUSP28-202ENST00000405954 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.95■□□□□ 0.78
DUSP28-202ENST00000405954 MYT1LQ9UL68 1186 aa19.95■□□□□ 0.78
DUSP28-202ENST00000405954 APLP2Q06481 763 aa19.92■□□□□ 0.78
DUSP28-202ENST00000405954 ABCC8Q09428 1581 aa19.92■□□□□ 0.78
DUSP28-202ENST00000405954 UBTFP17480 764 aaKnown RBP19.9■□□□□ 0.78
DUSP28-202ENST00000405954 SALL2Q9Y467 1007 aaPredicted RBP19.89■□□□□ 0.77
DUSP28-202ENST00000405954 CCDC88BA6NC98 1476 aa19.8■□□□□ 0.76
DUSP28-202ENST00000405954 TRIM52Q96A61 297 aa19.79■□□□□ 0.76
DUSP28-202ENST00000405954 SOGA1O94964 1423 aa19.77■□□□□ 0.76
DUSP28-202ENST00000405954 NACADO15069 1562 aa19.76■□□□□ 0.75
DUSP28-202ENST00000405954 MSH5O43196 834 aa19.76■□□□□ 0.75
DUSP28-202ENST00000405954 IRX6P78412 446 aaPredicted RBP19.75■□□□□ 0.75
DUSP28-202ENST00000405954 RUSC2Q8N2Y8 1516 aa19.73■□□□□ 0.75
DUSP28-202ENST00000405954 KCNH8Q96L42 1107 aa19.68■□□□□ 0.74
DUSP28-202ENST00000405954 CEP162Q5TB80 1403 aa19.65■□□□□ 0.74
DUSP28-202ENST00000405954 ERICH6BQ5W0A0 696 aa19.58■□□□□ 0.72
DUSP28-202ENST00000405954 DDX10Q13206 875 aaKnown RBP19.57■□□□□ 0.72
DUSP28-202ENST00000405954 IL27Q8NEV9 243 aa19.55■□□□□ 0.72
DUSP28-202ENST00000405954 BAZ1AQ9NRL2 1556 aaPredicted RBP19.55■□□□□ 0.72
DUSP28-202ENST00000405954 NOP58Q9Y2X3 529 aaKnown RBP19.54■□□□□ 0.72
DUSP28-202ENST00000405954 FANCIQ9NVI1 1328 aa19.53■□□□□ 0.72
DUSP28-202ENST00000405954 ANP32AP39687 249 aaKnown RBP19.5■□□□□ 0.71
DUSP28-202ENST00000405954 UBE2Q2Q8WVN8 375 aa19.49■□□□□ 0.71
DUSP28-202ENST00000405954 ANP32CO43423 234 aa19.46■□□□□ 0.71
DUSP28-202ENST00000405954 ZBTB47Q9UFB7 747 aaPredicted RBP19.45■□□□□ 0.7
DUSP28-202ENST00000405954 EIF4G1Q04637 1599 aaKnown RBP19.44■□□□□ 0.7
DUSP28-202ENST00000405954 NPM2Q86SE8 214 aaKnown RBP19.42■□□□□ 0.7
DUSP28-202ENST00000405954 HNRNPUQ00839 825 aaKnown RBP eCLIP19.4■□□□□ 0.7
DUSP28-202ENST00000405954 SMARCA2P51531 1590 aa19.4■□□□□ 0.7
DUSP28-202ENST00000405954 PKNOX2Q96KN3 472 aa19.37■□□□□ 0.69
DUSP28-202ENST00000405954 GLIPR1L2Q4G1C9 344 aa19.37■□□□□ 0.69
DUSP28-202ENST00000405954 TOP2AP11388 1531 aaKnown RBP19.36■□□□□ 0.69
DUSP28-202ENST00000405954 SMARCA4P51532 1647 aa19.35■□□□□ 0.69
DUSP28-202ENST00000405954 HIRIP3Q9BW71 556 aaPredicted RBP19.34■□□□□ 0.69
DUSP28-202ENST00000405954 TNIKQ9UKE5 1360 aa19.34■□□□□ 0.69
DUSP28-202ENST00000405954 B4GALNT3Q6L9W6 998 aa19.32■□□□□ 0.68
DUSP28-202ENST00000405954 UNC13AQ9UPW8 1703 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms