Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 RN7SL523P-201ENST00000484401 298 ntBASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 RNA5SP420-201ENST00000516997 137 ntBASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 HCG11-201ENST00000411553 5696 ntBASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 Z98885.3-201ENST00000624882 1757 ntBASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 MIR611-201ENST00000384869 67 ntBASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 DKKL1P1-201ENST00000400550 698 ntBASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 RN7SL173P-201ENST00000461853 292 ntBASIC17■□□□□ 0.31
CCDC88AQ3V6T2 ISL1-203ENST00000511384 981 ntTSL 5 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 POLL-206ENST00000370172 2308 ntTSL 2 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17■□□□□ 0.31
CCDC88AQ3V6T2 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 HDGF-202ENST00000368206 960 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 AC064850.1-201ENST00000413279 1398 ntBASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 POLR2LP1-206ENST00000444785 187 ntBASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 CICP16-201ENST00000502609 2813 ntBASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 PRR20FP-201ENST00000603320 180 ntBASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 AC073869.4-201ENST00000620841 800 ntBASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms