Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 MAGEA5-201ENST00000446757 942 ntBASIC14.39□□□□□ -0.11
DKK3Q9UBP4 CEP164P1-201ENST00000455142 418 ntBASIC14.39□□□□□ -0.11
DKK3Q9UBP4 KRT18P15-201ENST00000458108 1291 ntBASIC14.39□□□□□ -0.11
DKK3Q9UBP4 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 RN7SL67P-201ENST00000492147 296 ntBASIC14.39□□□□□ -0.11
DKK3Q9UBP4 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 RNA5SP423-201ENST00000517127 109 ntBASIC14.39□□□□□ -0.11
DKK3Q9UBP4 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 AC015967.2-201ENST00000624092 234 ntBASIC14.39□□□□□ -0.11
DKK3Q9UBP4 AC006435.4-201ENST00000625037 234 ntBASIC14.39□□□□□ -0.11
DKK3Q9UBP4 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 AL356737.1-201ENST00000634391 234 ntBASIC14.39□□□□□ -0.11
DKK3Q9UBP4 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 AC041040.2-201ENST00000622926 2899 ntBASIC14.39□□□□□ -0.11
DKK3Q9UBP4 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
DKK3Q9UBP4 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 BRD7P5-201ENST00000299197 1822 ntBASIC14.38□□□□□ -0.11
DKK3Q9UBP4 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 COL6A4P2-202ENST00000504443 2753 ntBASIC14.38□□□□□ -0.11
DKK3Q9UBP4 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 KRT17P5-201ENST00000332088 839 ntBASIC14.38□□□□□ -0.11
DKK3Q9UBP4 OR2K2-202ENST00000374428 1038 ntBASIC14.38□□□□□ -0.11
DKK3Q9UBP4 USP17L6P-201ENST00000382470 1197 ntBASIC14.38□□□□□ -0.11
DKK3Q9UBP4 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 DUTP3-201ENST00000450025 415 ntBASIC14.38□□□□□ -0.11
DKK3Q9UBP4 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 AL133499.1-201ENST00000596207 608 ntBASIC14.38□□□□□ -0.11
DKK3Q9UBP4 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 SHMT1P1-201ENST00000419974 1312 ntBASIC14.38□□□□□ -0.11
DKK3Q9UBP4 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
DKK3Q9UBP4 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
DKK3Q9UBP4 AL022313.4-201ENST00000562756 2046 ntBASIC14.37□□□□□ -0.11
DKK3Q9UBP4 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
DKK3Q9UBP4 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC14.37□□□□□ -0.11
DKK3Q9UBP4 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
DKK3Q9UBP4 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
DKK3Q9UBP4 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
DKK3Q9UBP4 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
DKK3Q9UBP4 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
DKK3Q9UBP4 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms