Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
NKX2-2O95096 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.16□□□□□ -0.3
NKX2-2O95096 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.16□□□□□ -0.3
NKX2-2O95096 DUT-208ENST00000559540 1441 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX2-2O95096 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
NKX2-2O95096 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
NKX2-2O95096 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 RNA5SP359-201ENST00000364838 113 ntBASIC13.16□□□□□ -0.3
NKX2-2O95096 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 NCR3-202ENST00000376071 541 ntTSL 5 BASIC13.16□□□□□ -0.3
NKX2-2O95096 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX2-2O95096 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 SLC16A6P1-201ENST00000413214 1059 ntBASIC13.16□□□□□ -0.3
NKX2-2O95096 RPS9P1-201ENST00000419943 583 ntBASIC13.16□□□□□ -0.3
NKX2-2O95096 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC13.16□□□□□ -0.3
NKX2-2O95096 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX2-2O95096 CHCHD2P2-201ENST00000503744 321 ntBASIC13.16□□□□□ -0.3
NKX2-2O95096 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC13.16□□□□□ -0.3
NKX2-2O95096 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC13.16□□□□□ -0.3
NKX2-2O95096 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 EMC4-209ENST00000559421 497 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX2-2O95096 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC13.16□□□□□ -0.3
NKX2-2O95096 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
NKX2-2O95096 NAP1L6-202ENST00000641404 1222 ntBASIC13.16□□□□□ -0.3
NKX2-2O95096 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
NKX2-2O95096 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
NKX2-2O95096 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
NKX2-2O95096 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
NKX2-2O95096 FAM90A12P-201ENST00000519497 2375 ntBASIC13.16□□□□□ -0.3
NKX2-2O95096 FAM90A24P-201ENST00000520792 2369 ntBASIC13.16□□□□□ -0.3
NKX2-2O95096 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-2O95096 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
NKX2-2O95096 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
NKX2-2O95096 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX2-2O95096 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX2-2O95096 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC13.15□□□□□ -0.3
NKX2-2O95096 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX2-2O95096 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC13.15□□□□□ -0.3
NKX2-2O95096 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC13.15□□□□□ -0.3
NKX2-2O95096 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
NKX2-2O95096 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
NKX2-2O95096 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.15□□□□□ -0.3
NKX2-2O95096 AC092658.1-201ENST00000505836 891 ntBASIC13.15□□□□□ -0.3
NKX2-2O95096 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.15□□□□□ -0.3
NKX2-2O95096 MIR4538-201ENST00000581377 78 ntBASIC13.15□□□□□ -0.3
NKX2-2O95096 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.15□□□□□ -0.3
NKX2-2O95096 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
NKX2-2O95096 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC13.15□□□□□ -0.3
NKX2-2O95096 AC100757.4-201ENST00000626934 759 ntBASIC13.15□□□□□ -0.3
NKX2-2O95096 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
NKX2-2O95096 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX2-2O95096 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC13.15□□□□□ -0.3
NKX2-2O95096 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 AL139158.3-201ENST00000641212 1562 ntBASIC13.15□□□□□ -0.3
NKX2-2O95096 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-2O95096 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
NKX2-2O95096 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.31
NKX2-2O95096 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.15□□□□□ -0.31
NKX2-2O95096 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.15□□□□□ -0.31
NKX2-2O95096 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-2O95096 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-2O95096 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-2O95096 TUBBP5-203ENST00000508529 1334 ntBASIC13.14□□□□□ -0.31
NKX2-2O95096 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-2O95096 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-2O95096 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-2O95096 AC068760.1-201ENST00000493579 1953 ntBASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms