Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM55Q9BYV6 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM55Q9BYV6 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
TRIM55Q9BYV6 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
TRIM55Q9BYV6 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC14.58□□□□□ -0.07
TRIM55Q9BYV6 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
TRIM55Q9BYV6 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
TRIM55Q9BYV6 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
TRIM55Q9BYV6 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC14.58□□□□□ -0.07
TRIM55Q9BYV6 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
TRIM55Q9BYV6 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 APOC3-202ENST00000375345 604 ntTSL 5 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 RPL13AP25-201ENST00000484130 612 ntBASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 AC108725.1-201ENST00000495472 409 ntBASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 AC106760.1-201ENST00000508690 800 ntBASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC14.58□□□□□ -0.08
TRIM55Q9BYV6 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 SALL4P5-201ENST00000419001 1760 ntBASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 BEND3P3-201ENST00000611030 2440 ntBASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 MIR193BHG-211ENST00000641433 5365 ntBASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 AC015688.4-201ENST00000580780 1647 ntBASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 BAATP1-201ENST00000412284 1225 ntBASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 CD74-212ENST00000524315 584 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 AP000812.2-201ENST00000538934 718 ntBASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 AC084346.2-201ENST00000607097 949 ntBASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 AC244669.2-201ENST00000612320 853 ntBASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM55Q9BYV6 AC005252.2-201ENST00000624630 1141 ntBASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms