Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 LINC00273-201ENST00000539813 1452 ntBASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28AQ8IWP9 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28AQ8IWP9 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC28AQ8IWP9 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28AQ8IWP9 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28AQ8IWP9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CCDC28AQ8IWP9 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28AQ8IWP9 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28AQ8IWP9 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28AQ8IWP9 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28AQ8IWP9 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC28AQ8IWP9 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC28AQ8IWP9 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
CCDC28AQ8IWP9 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC28AQ8IWP9 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC28AQ8IWP9 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC28AQ8IWP9 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28AQ8IWP9 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28AQ8IWP9 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28AQ8IWP9 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28AQ8IWP9 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28AQ8IWP9 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28AQ8IWP9 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28AQ8IWP9 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28AQ8IWP9 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28AQ8IWP9 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CCDC28AQ8IWP9 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC28AQ8IWP9 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC18.75■□□□□ 0.59
CCDC28AQ8IWP9 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28AQ8IWP9 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CCDC28AQ8IWP9 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28AQ8IWP9 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 EI24-212ENST00000615917 1407 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28AQ8IWP9 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 AC044849.2-201ENST00000606596 710 ntBASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28AQ8IWP9 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CCDC28AQ8IWP9 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC28AQ8IWP9 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCDC28AQ8IWP9 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC28AQ8IWP9 CIB2-204ENST00000557846 934 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC28AQ8IWP9 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC28AQ8IWP9 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC28AQ8IWP9 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC28AQ8IWP9 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCDC28AQ8IWP9 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC28AQ8IWP9 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC28AQ8IWP9 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CCDC28AQ8IWP9 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CCDC28AQ8IWP9 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC28AQ8IWP9 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC28AQ8IWP9 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms