Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
CNTN3Q9P232 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CNTN3Q9P232 AL591122.2-201ENST00000624125 1853 ntBASIC15.34■□□□□ 0.05
CNTN3Q9P232 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 HMGA1P1-201ENST00000415560 1062 ntBASIC15.34■□□□□ 0.05
CNTN3Q9P232 PPP1R2P4-201ENST00000424051 595 ntBASIC15.34■□□□□ 0.05
CNTN3Q9P232 AC069218.1-201ENST00000435269 762 ntBASIC15.34■□□□□ 0.05
CNTN3Q9P232 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC15.34■□□□□ 0.05
CNTN3Q9P232 GOLGA2P8-201ENST00000505201 779 ntBASIC15.34■□□□□ 0.05
CNTN3Q9P232 MRPL22P1-201ENST00000505398 616 ntBASIC15.34■□□□□ 0.05
CNTN3Q9P232 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC15.34■□□□□ 0.05
CNTN3Q9P232 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 POLD4-208ENST00000532830 904 ntTSL 3 BASIC15.34■□□□□ 0.05
CNTN3Q9P232 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC15.34■□□□□ 0.05
CNTN3Q9P232 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC15.34■□□□□ 0.05
CNTN3Q9P232 AC018635.2-201ENST00000608625 364 ntBASIC15.34■□□□□ 0.05
CNTN3Q9P232 AL021707.6-201ENST00000609212 491 ntBASIC15.34■□□□□ 0.05
CNTN3Q9P232 AC073352.2-201ENST00000609385 439 ntBASIC15.34■□□□□ 0.05
CNTN3Q9P232 AC242376.2-201ENST00000619355 883 ntBASIC15.34■□□□□ 0.05
CNTN3Q9P232 YRDCP1-201ENST00000621419 643 ntBASIC15.34■□□□□ 0.05
CNTN3Q9P232 AC009145.4-201ENST00000625119 1294 ntBASIC15.34■□□□□ 0.05
CNTN3Q9P232 BEND3P1-201ENST00000421591 1944 ntBASIC15.34■□□□□ 0.05
CNTN3Q9P232 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.34■□□□□ 0.05
CNTN3Q9P232 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
CNTN3Q9P232 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.34■□□□□ 0.05
CNTN3Q9P232 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.34■□□□□ 0.05
CNTN3Q9P232 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CNTN3Q9P232 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.34■□□□□ 0.05
CNTN3Q9P232 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC15.33■□□□□ 0.05
CNTN3Q9P232 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CNTN3Q9P232 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CNTN3Q9P232 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
CNTN3Q9P232 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CNTN3Q9P232 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.05
CNTN3Q9P232 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CNTN3Q9P232 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CNTN3Q9P232 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CNTN3Q9P232 AC152010.1-201ENST00000415779 2006 ntBASIC15.33■□□□□ 0.04
CNTN3Q9P232 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CNTN3Q9P232 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CNTN3Q9P232 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CNTN3Q9P232 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CNTN3Q9P232 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CNTN3Q9P232 AL512306.1-201ENST00000432698 848 ntBASIC15.33■□□□□ 0.04
CNTN3Q9P232 HLA-DPB2-205ENST00000435074 1188 ntBASIC15.33■□□□□ 0.04
CNTN3Q9P232 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 CMC2-204ENST00000562713 573 ntTSL 3 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 AL031713.1-201ENST00000564813 661 ntBASIC15.33■□□□□ 0.04
CNTN3Q9P232 CMC2-209ENST00000565108 399 ntTSL 2 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 WDR7-208ENST00000589935 544 ntTSL 4 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CNTN3Q9P232 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CNTN3Q9P232 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CNTN3Q9P232 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CNTN3Q9P232 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC15.33■□□□□ 0.04
CNTN3Q9P232 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CNTN3Q9P232 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC15.32■□□□□ 0.04
CNTN3Q9P232 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CNTN3Q9P232 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.32■□□□□ 0.04
CNTN3Q9P232 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNTN3Q9P232 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.32■□□□□ 0.04
CNTN3Q9P232 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
CNTN3Q9P232 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC15.32■□□□□ 0.04
CNTN3Q9P232 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CNTN3Q9P232 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNTN3Q9P232 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNTN3Q9P232 API5-208ENST00000531273 1868 ntTSL 2 BASIC15.32■□□□□ 0.04
CNTN3Q9P232 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC15.32■□□□□ 0.04
CNTN3Q9P232 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC15.32■□□□□ 0.04
CNTN3Q9P232 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNTN3Q9P232 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CNTN3Q9P232 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC15.32■□□□□ 0.04
CNTN3Q9P232 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms