Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 AC022447.6-201ENST00000515522 438 ntBASIC13.23□□□□□ -0.29
LRFN1Q9P244 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 NEU3-205ENST00000531619 582 ntTSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 MIR3677-201ENST00000578964 60 ntBASIC13.23□□□□□ -0.29
LRFN1Q9P244 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 AC103810.10-201ENST00000606504 343 ntBASIC13.23□□□□□ -0.29
LRFN1Q9P244 AC051619.9-201ENST00000623237 597 ntBASIC13.23□□□□□ -0.29
LRFN1Q9P244 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 PTENP1-202ENST00000532280 3996 ntBASIC13.23□□□□□ -0.29
LRFN1Q9P244 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.23□□□□□ -0.29
LRFN1Q9P244 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 LAP3P2-201ENST00000454686 1454 ntBASIC13.23□□□□□ -0.29
LRFN1Q9P244 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 SNX18-202ENST00000343017 3140 ntBASIC13.22□□□□□ -0.29
LRFN1Q9P244 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 MPV17-204ENST00000399052 749 ntTSL 4 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 FGFR3P1-201ENST00000449999 601 ntBASIC13.22□□□□□ -0.29
LRFN1Q9P244 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 RN7SL277P-201ENST00000481521 288 ntBASIC13.22□□□□□ -0.29
LRFN1Q9P244 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 AC093752.3-201ENST00000567343 901 ntBASIC13.22□□□□□ -0.29
LRFN1Q9P244 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 MIR4706-201ENST00000582134 82 ntBASIC13.22□□□□□ -0.29
LRFN1Q9P244 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 U62317.3-201ENST00000608319 855 ntBASIC13.22□□□□□ -0.29
LRFN1Q9P244 AC090386.2-201ENST00000623010 1039 ntBASIC13.22□□□□□ -0.29
LRFN1Q9P244 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 AC104581.4-201ENST00000623126 3052 ntBASIC13.22□□□□□ -0.29
LRFN1Q9P244 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LRFN1Q9P244 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.22□□□□□ -0.29
LRFN1Q9P244 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms