Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 U3.41-201ENST00000408711 219 ntBASIC13.79□□□□□ -0.2
VPS13AQ96RL7 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 RN7SL363P-201ENST00000482412 273 ntBASIC13.79□□□□□ -0.2
VPS13AQ96RL7 CMC2-204ENST00000562713 573 ntTSL 3 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 CMC2-209ENST00000565108 399 ntTSL 2 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 AL021707.6-201ENST00000609212 491 ntBASIC13.79□□□□□ -0.2
VPS13AQ96RL7 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 AC011498.7-201ENST00000624986 2027 ntBASIC13.78□□□□□ -0.2
VPS13AQ96RL7 HDGF-202ENST00000368206 960 ntTSL 5 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 AC108112.1-201ENST00000505567 659 ntTSL 5 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 AC099343.1-201ENST00000513481 609 ntBASIC13.78□□□□□ -0.2
VPS13AQ96RL7 MT3-202ENST00000561640 514 ntTSL 3 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC13.78□□□□□ -0.2
VPS13AQ96RL7 CCND3P2-201ENST00000579393 537 ntBASIC13.78□□□□□ -0.2
VPS13AQ96RL7 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 AC015656.1-201ENST00000624209 3578 ntBASIC13.78□□□□□ -0.2
VPS13AQ96RL7 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 SERPINE3-203ENST00000521255 1439 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 RPL10P8-201ENST00000522888 313 ntBASIC13.78□□□□□ -0.2
VPS13AQ96RL7 MAX-218ENST00000557746 571 ntTSL 4 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS13AQ96RL7 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 AL118508.1-201ENST00000613502 2345 ntBASIC13.77□□□□□ -0.2
VPS13AQ96RL7 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 RNA5SP491-201ENST00000362936 118 ntBASIC13.77□□□□□ -0.2
VPS13AQ96RL7 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 AL133453.1-201ENST00000554055 581 ntTSL 3 BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 AL807742.1-201ENST00000636678 1160 ntTSL 5 BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 SLC36A1-211ENST00000616007 1389 ntTSL 2 BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.77□□□□□ -0.2
VPS13AQ96RL7 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 ALMS1P1-201ENST00000428767 921 ntBASIC13.77□□□□□ -0.21
VPS13AQ96RL7 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 HLA-DQB2-231ENST00000435145 2026 ntBASIC13.77□□□□□ -0.21
VPS13AQ96RL7 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms