Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 NEK3-205ENST00000610828 2396 ntAPPRIS P2 TSL 1 (best) BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 MICA-210ENST00000616296 2260 ntTSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 LIMK2-202ENST00000333611 3462 ntAPPRIS ALT1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 FLT4-202ENST00000393347 4292 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AC098934.1-201ENST00000443294 1835 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 ATIC-201ENST00000236959 2213 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 TXNDC17-201ENST00000250101 2219 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AC099786.2-201ENST00000427892 2203 ntTSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AIF1L-206ENST00000372302 3340 ntTSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 SMTN-222ENST00000612341 3321 ntAPPRIS ALT2 TSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 LARP4B-201ENST00000316157 5642 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 TBC1D3F-201ENST00000620210 2117 ntAPPRIS P1 TSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 NFIX-201ENST00000358552 1727 ntTSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 RBM39-203ENST00000361162 2831 ntAPPRIS ALT1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 ZNF529-209ENST00000591340 4331 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AL355336.1-201ENST00000451355 1676 ntTSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 CHIC1-202ENST00000373504 6797 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 PKD1L2-210ENST00000533478 5669 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 RNU1-129P-201ENST00000384064 167 ntBASIC8.89□□□□□ -0.99
LINC00643Q86TS7 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AC136604.1-201ENST00000418535 575 ntBASIC8.89□□□□□ -0.99
LINC00643Q86TS7 PEMT-206ENST00000435340 960 ntTSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AP003097.1-201ENST00000530657 1135 ntBASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AC011840.4-201ENST00000578471 627 ntBASIC8.89□□□□□ -0.99
LINC00643Q86TS7 U1.21-201ENST00000580816 167 ntBASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AP001462.1-201ENST00000594089 452 ntBASIC8.89□□□□□ -0.99
LINC00643Q86TS7 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 SPEG-225ENST00000617028 815 ntTSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AC004840.1-201ENST00000636359 365 ntBASIC8.89□□□□□ -0.99
LINC00643Q86TS7 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 AMACR-201ENST00000335606 4153 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 TESK2-202ENST00000372086 3074 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 CAPN1-208ENST00000527323 3086 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 WDR31-201ENST00000341761 4862 ntAPPRIS P3 TSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 WDR31-202ENST00000374193 4878 ntAPPRIS ALT1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 RBMXL3-201ENST00000424776 3442 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 FAM90A17P-201ENST00000533716 1957 ntBASIC8.89□□□□□ -0.99
LINC00643Q86TS7 GOLGA1-202ENST00000373555 4811 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 SMARCE1-202ENST00000348513 5840 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 IKZF1-201ENST00000331340 6189 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 LINC01254-202ENST00000567609 1907 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 STX16-205ENST00000361830 4318 ntTSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 MAMLD1-201ENST00000262858 4607 ntAPPRIS P3 TSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 MED29-207ENST00000615911 3565 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 TTC16-201ENST00000373289 2897 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 FAM160B2-201ENST00000289921 4245 ntAPPRIS P1 TSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 C17orf80-201ENST00000255557 2163 ntAPPRIS ALT2 TSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 DCT-201ENST00000377028 5064 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 DBH-202ENST00000393056 2763 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 NLRP2-206ENST00000427260 3411 ntTSL 2 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 LINC01122-207ENST00000452840 4077 ntTSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 LINC01209-201ENST00000451289 2400 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC8.89□□□□□ -0.99
LINC00643Q86TS7 ABCC8-201ENST00000302539 4923 ntAPPRIS ALT1 TSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 TBC1D16-201ENST00000310924 10936 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 GOLGA6L7P-201ENST00000567390 2397 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 EVL-214ENST00000555048 1715 ntTSL 3 BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 GNG7-201ENST00000382159 4208 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 FAM177A1-201ENST00000280987 2927 ntAPPRIS P3 TSL 1 (best) BASIC8.88□□□□□ -0.99
LINC00643Q86TS7 USP11-204ENST00000377107 3515 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms