RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 NISCHQ9Y2I1 1504 aa29.48■■■□□ 2.31
NEK3-205ENST00000610828 CCDC180Q9P1Z9 1646 aa25.35■■□□□ 1.65
NEK3-205ENST00000610828 ZCCHC6Q5VYS8 1495 aaKnown RBP24.85■■□□□ 1.57
NEK3-205ENST00000610828 SHROOM4Q9ULL8 1493 aa24.67■■□□□ 1.54
NEK3-205ENST00000610828 DCAF8L2P0C7V8 631 aa24.46■■□□□ 1.51
NEK3-205ENST00000610828 DCAF1Q9Y4B6 1507 aa24.25■■□□□ 1.47
NEK3-205ENST00000610828 SUPT5HO00267 1087 aaKnown RBP23.99■■□□□ 1.43
NEK3-205ENST00000610828 ABCC9O60706 1549 aa23.75■■□□□ 1.39
NEK3-205ENST00000610828 MYO15BQ96JP2 1530 aa23.74■■□□□ 1.39
NEK3-205ENST00000610828 SCRIBQ14160 1630 aa23.58■■□□□ 1.37
NEK3-205ENST00000610828 NACADO15069 1562 aa23.52■■□□□ 1.36
NEK3-205ENST00000610828 RB1CC1Q8TDY2 1594 aa23.24■■□□□ 1.31
NEK3-205ENST00000610828 CHIC1Q5VXU3 224 aa23.13■■□□□ 1.29
NEK3-205ENST00000610828 RSF1Q96T23 1441 aaPredicted RBP23.11■■□□□ 1.29
NEK3-205ENST00000610828 CECR2Q9BXF3 1484 aa22.96■■□□□ 1.27
NEK3-205ENST00000610828 MROH2BQ7Z745 1585 aa22.85■■□□□ 1.25
NEK3-205ENST00000610828 UNC13AQ9UPW8 1703 aa22.84■■□□□ 1.25
NEK3-205ENST00000610828 WIZO95785 1651 aa22.71■■□□□ 1.23
NEK3-205ENST00000610828 BAZ1AQ9NRL2 1556 aaPredicted RBP22.7■■□□□ 1.22
NEK3-205ENST00000610828 PABPN1Q86U42 306 aaKnown RBP eCLIP22.57■■□□□ 1.28e-7■■□□□ 13.3
NEK3-205ENST00000610828 BICRAQ9NZM4 1560 aa22.56■■□□□ 1.2
NEK3-205ENST00000610828 SMARCA4P51532 1647 aa22.55■■□□□ 1.2
NEK3-205ENST00000610828 TRIM41Q8WV44 630 aa22.44■■□□□ 1.18
NEK3-205ENST00000610828 TOP2AP11388 1531 aaKnown RBP22.4■■□□□ 1.18
NEK3-205ENST00000610828 LOC105371045A0A1W2PR82 267 aa22.37■■□□□ 1.17
NEK3-205ENST00000610828 CCDC88BA6NC98 1476 aa22.25■■□□□ 1.15
NEK3-205ENST00000610828 SMARCA2P51531 1590 aa22.23■■□□□ 1.15
NEK3-205ENST00000610828 EIF4G1Q04637 1599 aaKnown RBP22.22■■□□□ 1.15
NEK3-205ENST00000610828 PEG3Q9GZU2 1588 aa22.17■■□□□ 1.14
NEK3-205ENST00000610828 FAM9AQ8IZU1 332 aaPredicted RBP22.16■■□□□ 1.14
NEK3-205ENST00000610828 ATAD2BQ9ULI0 1458 aa22.07■■□□□ 1.12
NEK3-205ENST00000610828 ABCC8Q09428 1581 aa22.02■■□□□ 1.12
NEK3-205ENST00000610828 BAZ1BQ9UIG0 1483 aaKnown RBP22■■□□□ 1.11
NEK3-205ENST00000610828 EHMT2Q96KQ7 1210 aa21.94■■□□□ 1.1
NEK3-205ENST00000610828 PCGF6Q9BYE7 350 aa21.91■■□□□ 1.1
NEK3-205ENST00000610828 WRNQ14191 1432 aaPredicted RBP eCLIP21.75■■□□□ 1.07
NEK3-205ENST00000610828 NCAPD3P42695 1498 aa21.74■■□□□ 1.07
NEK3-205ENST00000610828 HMGXB3Q12766 1538 aa21.73■■□□□ 1.07
NEK3-205ENST00000610828 SOGA1O94964 1423 aa21.71■■□□□ 1.07
NEK3-205ENST00000610828 TRIM26Q12899 539 aaPredicted RBP21.67■■□□□ 1.06
NEK3-205ENST00000610828 SYNJ1O43426 1573 aa21.64■■□□□ 1.06
NEK3-205ENST00000610828 EEA1Q15075 1411 aa21.62■■□□□ 1.05
NEK3-205ENST00000610828 HRCP23327 699 aa21.61■■□□□ 1.05
NEK3-205ENST00000610828 RUSC2Q8N2Y8 1516 aa21.61■■□□□ 1.05
NEK3-205ENST00000610828 CSRNP3Q8WYN3 585 aa21.58■■□□□ 1.04
NEK3-205ENST00000610828 TOP2BQ02880 1626 aa21.46■■□□□ 1.03
NEK3-205ENST00000610828 TNIKQ9UKE5 1360 aa21.44■■□□□ 1.02
NEK3-205ENST00000610828 UBTFP17480 764 aaKnown RBP21.44■■□□□ 1.02
NEK3-205ENST00000610828 CFTRP13569 1480 aa21.43■■□□□ 1.02
NEK3-205ENST00000610828 CEP162Q5TB80 1403 aa21.43■■□□□ 1.02
NEK3-205ENST00000610828 CC2D2AQ9P2K1 1620 aa21.43■■□□□ 1.02
NEK3-205ENST00000610828 GOLGA3Q08378 1498 aa21.42■■□□□ 1.02
NEK3-205ENST00000610828 BIVM-ERCC5R4GMW8 1640 aa21.39■■□□□ 1.02
NEK3-205ENST00000610828 PPARGC1BQ86YN6 1023 aaKnown RBP21.37■■□□□ 1.01
NEK3-205ENST00000610828 CEP164Q9UPV0 1460 aa21.36■■□□□ 1.01
NEK3-205ENST00000610828 KIF21BO75037 1637 aa21.33■■□□□ 1.01
NEK3-205ENST00000610828 CUX1P39880 1505 aa21.32■■□□□ 1
NEK3-205ENST00000610828 PRDM2Q13029 1718 aa21.29■■□□□ 1
NEK3-205ENST00000610828 CADPSQ9ULU8 1353 aa21.28■■□□□ 1
NEK3-205ENST00000610828 RAPGEF2Q9Y4G8 1499 aa21.22■□□□□ 0.99
NEK3-205ENST00000610828 CLIP1P30622 1438 aa21.13■□□□□ 0.97
NEK3-205ENST00000610828 KIF27Q86VH2 1401 aa21.13■□□□□ 0.97
NEK3-205ENST00000610828 TTBK1Q5TCY1 1321 aaPredicted RBP21.12■□□□□ 0.97
NEK3-205ENST00000610828 PRXQ9BXM0 1461 aa21.1■□□□□ 0.97
NEK3-205ENST00000610828 ERICH3Q5RHP9 1530 aa21.09■□□□□ 0.97
NEK3-205ENST00000610828 FANCD2Q9BXW9 1451 aa21.07■□□□□ 0.96
NEK3-205ENST00000610828 RANGAP1P46060 587 aaPredicted RBP21.07■□□□□ 0.96
NEK3-205ENST00000610828 FGD5Q6ZNL6 1462 aa21.02■□□□□ 0.95
NEK3-205ENST00000610828 ZEB1P37275 1124 aaPredicted RBP21.01■□□□□ 0.95
NEK3-205ENST00000610828 NESP48681 1621 aa21.01■□□□□ 0.95
NEK3-205ENST00000610828 CUX2O14529 1486 aa21■□□□□ 0.95
NEK3-205ENST00000610828 VPS8Q8N3P4 1428 aa21■□□□□ 0.95
NEK3-205ENST00000610828 DNMBPQ6XZF7 1577 aa20.92■□□□□ 0.94
NEK3-205ENST00000610828 IGF1RP08069 1367 aa20.91■□□□□ 0.94
NEK3-205ENST00000610828 LAMC3Q9Y6N6 1575 aa20.91■□□□□ 0.94
NEK3-205ENST00000610828 APLP2Q06481 763 aa20.89■□□□□ 0.93
NEK3-205ENST00000610828 DNAJC5BQ9UF47 199 aa20.89■□□□□ 0.93
NEK3-205ENST00000610828 TOPBP1Q92547 1522 aa20.88■□□□□ 0.93
NEK3-205ENST00000610828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.85■□□□□ 0.93
NEK3-205ENST00000610828 ARAP1Q96P48 1450 aa20.84■□□□□ 0.93
NEK3-205ENST00000610828 POLA1P09884 1462 aaPredicted RBP20.84■□□□□ 0.93
NEK3-205ENST00000610828 RAD54L2Q9Y4B4 1467 aa20.83■□□□□ 0.93
NEK3-205ENST00000610828 CARMIL1Q5VZK9 1371 aa20.83■□□□□ 0.92
NEK3-205ENST00000610828 CCER1Q8TC90 406 aaPredicted RBP20.79■□□□□ 0.92
NEK3-205ENST00000610828 ABCA10Q8WWZ4 1543 aa20.79■□□□□ 0.92
NEK3-205ENST00000610828 PDS5BQ9NTI5 1447 aa20.78■□□□□ 0.92
NEK3-205ENST00000610828 URB2Q14146 1524 aaKnown RBP20.77■□□□□ 0.92
NEK3-205ENST00000610828 ARHGAP35Q9NRY4 1499 aa20.75■□□□□ 0.91
NEK3-205ENST00000610828 KIF21AQ7Z4S6 1674 aa20.7■□□□□ 0.9
NEK3-205ENST00000610828 WDR97A6NE52 1622 aa20.64■□□□□ 0.9
NEK3-205ENST00000610828 HNRNPUL2Q1KMD3 747 aaKnown RBP20.64■□□□□ 0.89
NEK3-205ENST00000610828 KANK4Q5T7N3 995 aaPredicted RBP20.63■□□□□ 0.89
NEK3-205ENST00000610828 CUL7Q14999 1698 aa20.62■□□□□ 0.89
NEK3-205ENST00000610828 TDRD9Q8NDG6 1382 aaKnown RBP20.6■□□□□ 0.89
NEK3-205ENST00000610828 ABCA5Q8WWZ7 1642 aa20.57■□□□□ 0.88
NEK3-205ENST00000610828 GAPVD1Q14C86 1478 aa20.55■□□□□ 0.88
NEK3-205ENST00000610828 P3H3Q8IVL6 736 aa20.52■□□□□ 0.88
NEK3-205ENST00000610828 CTTNBP2Q8WZ74 1663 aa20.5■□□□□ 0.87
NEK3-205ENST00000610828 TARBP1Q13395 1621 aaKnown RBP20.5■□□□□ 0.87
NEK3-205ENST00000610828 FHAD1B1AJZ9 1412 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms