Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 KLF7-204ENST00000423015 1788 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 AC136604.1-202ENST00000425471 771 ntBASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 AK2P2-201ENST00000439142 405 ntBASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 AC245100.3-201ENST00000441281 285 ntBASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 MYCLP2-201ENST00000449268 967 ntBASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 AC020910.5-201ENST00000623668 1865 ntBASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 AC005252.2-201ENST00000624630 1141 ntBASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC28BQ9BUN5 STK3-218ENST00000617590 2485 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 KRT8P28-201ENST00000433288 1390 ntBASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 AC138466.3-201ENST00000619983 221 ntBASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 KCNMA1-287ENST00000640632 2808 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 STK25-235ENST00000543554 2556 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC28BQ9BUN5 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms