RNA–Protein interactions for RNA: ENST00000381867.5

SNPH-201, Transcript of syntaphilin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SNPH, Length 5,533 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNPH-201ENST00000381867 NISCHQ9Y2I1 1504 aa25.09■■□□□ 1.61
SNPH-201ENST00000381867 DCAF8L2P0C7V8 631 aa24.1■■□□□ 1.45
SNPH-201ENST00000381867 SUPT5HO00267 1087 aaKnown RBP22.62■■□□□ 1.21
SNPH-201ENST00000381867 SHROOM4Q9ULL8 1493 aa22.58■■□□□ 1.2
SNPH-201ENST00000381867 PELP1Q8IZL8 1130 aaKnown RBP22.42■■□□□ 1.18
SNPH-201ENST00000381867 EHMT2Q96KQ7 1210 aa21.93■■□□□ 1.1
SNPH-201ENST00000381867 APLP2Q06481 763 aa21.58■■□□□ 1.04
SNPH-201ENST00000381867 FAM9AQ8IZU1 332 aaPredicted RBP21.55■■□□□ 1.04
SNPH-201ENST00000381867 CENPBP07199 599 aaPredicted RBP21.53■■□□□ 1.04
SNPH-201ENST00000381867 PCGF6Q9BYE7 350 aa21.49■■□□□ 1.03
SNPH-201ENST00000381867 ERICH6Q7L0X2 663 aa21.48■■□□□ 1.03
SNPH-201ENST00000381867 MYT1Q01538 1121 aa21.42■■□□□ 1.02
SNPH-201ENST00000381867 ABCC9O60706 1549 aa21.37■■□□□ 1.01
SNPH-201ENST00000381867 CCER1Q8TC90 406 aaPredicted RBP21.37■■□□□ 1.01
SNPH-201ENST00000381867 ZEB1P37275 1124 aaPredicted RBP21.37■■□□□ 1.01
SNPH-201ENST00000381867 TRIM41Q8WV44 630 aa21.28■■□□□ 1
SNPH-201ENST00000381867 CCDC180Q9P1Z9 1646 aa21.24■□□□□ 0.99
SNPH-201ENST00000381867 TTBK1Q5TCY1 1321 aaPredicted RBP21.16■□□□□ 0.98
SNPH-201ENST00000381867 RANGAP1P46060 587 aaPredicted RBP21.08■□□□□ 0.96
SNPH-201ENST00000381867 ATP1B4Q9UN42 357 aaPredicted RBP20.98■□□□□ 0.95
SNPH-201ENST00000381867 NEFLP07196 543 aa20.97■□□□□ 0.95
SNPH-201ENST00000381867 UBTFP17480 764 aaKnown RBP20.86■□□□□ 0.93
SNPH-201ENST00000381867 YTHDC1Q96MU7 727 aaKnown RBP20.85■□□□□ 0.93
SNPH-201ENST00000381867 ZCCHC6Q5VYS8 1495 aaKnown RBP20.85■□□□□ 0.93
SNPH-201ENST00000381867 PABPN1Q86U42 306 aaKnown RBP eCLIP20.78■□□□□ 0.92
SNPH-201ENST00000381867 HRCP23327 699 aa20.56■□□□□ 0.88
SNPH-201ENST00000381867 RB1CC1Q8TDY2 1594 aa20.55■□□□□ 0.88
SNPH-201ENST00000381867 TRIM26Q12899 539 aaPredicted RBP20.53■□□□□ 0.88
SNPH-201ENST00000381867 SCRIBQ14160 1630 aa20.49■□□□□ 0.87
SNPH-201ENST00000381867 CHIC1Q5VXU3 224 aa20.48■□□□□ 0.87
SNPH-201ENST00000381867 NACADO15069 1562 aa20.45■□□□□ 0.86
SNPH-201ENST00000381867 DAXXQ9UER7 740 aaPredicted RBP20.39■□□□□ 0.85
SNPH-201ENST00000381867 MYT1LQ9UL68 1186 aa20.38■□□□□ 0.85
SNPH-201ENST00000381867 PPARGC1BQ86YN6 1023 aaKnown RBP20.33■□□□□ 0.84
SNPH-201ENST00000381867 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.3■□□□□ 0.84
SNPH-201ENST00000381867 HNRNPUL2Q1KMD3 747 aaKnown RBP20.3■□□□□ 0.84
SNPH-201ENST00000381867 DCAF1Q9Y4B6 1507 aa20.27■□□□□ 0.84
SNPH-201ENST00000381867 RTL5Q5HYW3 569 aaPredicted RBP20.09■□□□□ 0.81
SNPH-201ENST00000381867 ITGAEP38570 1179 aa20.06■□□□□ 0.8
SNPH-201ENST00000381867 POLR3GLQ9BT43 218 aa20■□□□□ 0.79
SNPH-201ENST00000381867 LOC105371045A0A1W2PR82 267 aa20■□□□□ 0.79
SNPH-201ENST00000381867 DIEXFQ68CQ4 756 aaKnown RBP19.99■□□□□ 0.79
SNPH-201ENST00000381867 ZNF316A6NFI3 1004 aaPredicted RBP19.92■□□□□ 0.78
SNPH-201ENST00000381867 MYO15BQ96JP2 1530 aa19.88■□□□□ 0.77
SNPH-201ENST00000381867 CSRNP3Q8WYN3 585 aa19.86■□□□□ 0.77
SNPH-201ENST00000381867 CNGB1Q14028 1251 aaPredicted RBP19.79■□□□□ 0.76
SNPH-201ENST00000381867 BAZ1AQ9NRL2 1556 aaPredicted RBP19.79■□□□□ 0.76
SNPH-201ENST00000381867 GTF3C3Q9Y5Q9 886 aa19.78■□□□□ 0.76
SNPH-201ENST00000381867 SLC4A1APQ9BWU0 796 aaKnown RBP19.78■□□□□ 0.76
SNPH-201ENST00000381867 CLSPNQ9HAW4 1339 aa19.78■□□□□ 0.76
SNPH-201ENST00000381867 FBLN2P98095 1184 aa19.77■□□□□ 0.76
SNPH-201ENST00000381867 RSF1Q96T23 1441 aaPredicted RBP19.77■□□□□ 0.76
SNPH-201ENST00000381867 BAZ1BQ9UIG0 1483 aaKnown RBP19.76■□□□□ 0.75
SNPH-201ENST00000381867 BCANQ96GW7 911 aa19.65■□□□□ 0.74
SNPH-201ENST00000381867 FAM50AQ14320 339 aaKnown RBP19.63■□□□□ 0.73
SNPH-201ENST00000381867 CDK11AQ9UQ88 783 aaPredicted RBP19.62■□□□□ 0.73
SNPH-201ENST00000381867 EEA1Q15075 1411 aa19.59■□□□□ 0.73
SNPH-201ENST00000381867 ANP32CO43423 234 aa19.5■□□□□ 0.71
SNPH-201ENST00000381867 TRIM52Q96A61 297 aa19.49■□□□□ 0.71
SNPH-201ENST00000381867 ACIN1Q9UKV3 1341 aaKnown RBP19.49■□□□□ 0.71
SNPH-201ENST00000381867 SMARCA2P51531 1590 aa19.49■□□□□ 0.71
SNPH-201ENST00000381867 WRNQ14191 1432 aaPredicted RBP eCLIP19.44■□□□□ 0.7
SNPH-201ENST00000381867 NEUROD1Q13562 356 aa19.41■□□□□ 0.7
SNPH-201ENST00000381867 P3H3Q8IVL6 736 aa19.4■□□□□ 0.7
SNPH-201ENST00000381867 CECR2Q9BXF3 1484 aa19.4■□□□□ 0.7
SNPH-201ENST00000381867 NPM1P06748 294 aaKnown RBP eCLIP19.37■□□□□ 0.69
SNPH-201ENST00000381867 CHMP7Q8WUX9 453 aaPredicted RBP19.35■□□□□ 0.69
SNPH-201ENST00000381867 KIF27Q86VH2 1401 aa19.34■□□□□ 0.69
SNPH-201ENST00000381867 ANP32AP39687 249 aaKnown RBP19.34■□□□□ 0.69
SNPH-201ENST00000381867 ERCC6Q03468 1493 aa19.32■□□□□ 0.68
SNPH-201ENST00000381867 GOLGA3Q08378 1498 aa19.3■□□□□ 0.68
SNPH-201ENST00000381867 ZBTB47Q9UFB7 747 aaPredicted RBP19.29■□□□□ 0.68
SNPH-201ENST00000381867 ZNF326Q5BKZ1 582 aaKnown RBP19.27■□□□□ 0.68
SNPH-201ENST00000381867 MROH2BQ7Z745 1585 aa19.25■□□□□ 0.67
SNPH-201ENST00000381867 CLIP1P30622 1438 aa19.21■□□□□ 0.67
SNPH-201ENST00000381867 CEP164Q9UPV0 1460 aa19.21■□□□□ 0.67
SNPH-201ENST00000381867 PDS5BQ9NTI5 1447 aa19.2■□□□□ 0.66
SNPH-201ENST00000381867 TOP2AP11388 1531 aaKnown RBP19.19■□□□□ 0.66
SNPH-201ENST00000381867 CANXP27824 592 aaKnown RBP19.19■□□□□ 0.66
SNPH-201ENST00000381867 ARID3CA6NKF2 412 aa19.18■□□□□ 0.66
SNPH-201ENST00000381867 ZNF777Q9ULD5 760 aaPredicted RBP19.17■□□□□ 0.66
SNPH-201ENST00000381867 EIF5BO60841 1220 aaKnown RBP19.17■□□□□ 0.66
SNPH-201ENST00000381867 SLC24A1O60721 1099 aa19.15■□□□□ 0.66
SNPH-201ENST00000381867 CCDC88BA6NC98 1476 aa19.12■□□□□ 0.65
SNPH-201ENST00000381867 MTUS2Q5JR59 1369 aa19.12■□□□□ 0.65
SNPH-201ENST00000381867 NPM2Q86SE8 214 aaKnown RBP19.12■□□□□ 0.65
SNPH-201ENST00000381867 TNIKQ9UKE5 1360 aa19.09■□□□□ 0.65
SNPH-201ENST00000381867 FKBP8Q14318 412 aa19.08■□□□□ 0.65
SNPH-201ENST00000381867 SMARCA4P51532 1647 aa19.07■□□□□ 0.64
SNPH-201ENST00000381867 ESF1Q9H501 851 aaKnown RBP19.07■□□□□ 0.64
SNPH-201ENST00000381867 GLIPR1L2Q4G1C9 344 aa19.06■□□□□ 0.64
SNPH-201ENST00000381867 ANP32BQ92688 251 aaKnown RBP19.05■□□□□ 0.64
SNPH-201ENST00000381867 ATAD2BQ9ULI0 1458 aa19.04■□□□□ 0.64
SNPH-201ENST00000381867 CEP162Q5TB80 1403 aa19.03■□□□□ 0.64
SNPH-201ENST00000381867 TSPY4P0CV99 314 aa19■□□□□ 0.63
SNPH-201ENST00000381867 TSPY10P0CW01 314 aa19■□□□□ 0.63
SNPH-201ENST00000381867 NEFMP07197 916 aa19■□□□□ 0.63
SNPH-201ENST00000381867 CADPSQ9ULU8 1353 aa18.99■□□□□ 0.63
SNPH-201ENST00000381867 CUX2O14529 1486 aa18.99■□□□□ 0.63
SNPH-201ENST00000381867 PLEKHD1A6NEE1 506 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms