Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CHEK2-219ENST00000448511 1532 ntTSL 212.96□□□□□ -0.332e-8■□□□□ 8.6
YBX3P16989 THUMPD1-202ENST00000396083 2624 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.352e-8■□□□□ 8.6
YBX3P16989 CHEK2-208ENST00000404276 1785 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.382e-8■□□□□ 8.6
YBX3P16989 CHEK2-211ENST00000417588 1551 ntTSL 212.57□□□□□ -0.42e-8■□□□□ 8.6
YBX3P16989 CHEK2-214ENST00000433728 1580 ntTSL 212.57□□□□□ -0.42e-8■□□□□ 8.6
YBX3P16989 CHEK2-206ENST00000402731 1545 ntTSL 1 (best) BASIC12.47□□□□□ -0.412e-8■□□□□ 8.6
YBX3P16989 GTF3C5-210ENST00000489842 696 ntTSL 212.47□□□□□ -0.412e-8■□□□□ 8.6
YBX3P16989 EMC1-203ENST00000461353 2175 ntTSL 212.43□□□□□ -0.422e-8■□□□□ 8.6
YBX3P16989 CHEK2-209ENST00000405598 1959 ntAPPRIS P3 TSL 5 BASIC12.29□□□□□ -0.442e-8■□□□□ 8.6
YBX3P16989 THUMPD1-201ENST00000381337 4122 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.552e-8■□□□□ 8.6
YBX3P16989 CHEK2-205ENST00000398017 713 ntTSL 510.54□□□□□ -0.722e-8■□□□□ 8.6
YBX3P16989 GMCL1-204ENST00000495047 478 ntTSL 29.01□□□□□ -0.972e-8■□□□□ 8.6
YBX3P16989 IP6K2-228ENST00000491686 662 ntTSL 27.32□□□□□ -1.242e-8■□□□□ 8.6
YBX3P16989 CHEK2-212ENST00000425190 752 ntTSL 57.02□□□□□ -1.292e-8■□□□□ 8.6
YBX3P16989 CHEK2-218ENST00000447421 900 ntTSL 56.27□□□□□ -1.412e-8■□□□□ 8.6
YBX3P16989 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.462e-8■□□□□ 8.6
YBX3P16989 PSMD14-205ENST00000492908 1786 ntTSL 25.29□□□□□ -1.562e-8■□□□□ 8.6
YBX3P16989 PSMD14-203ENST00000477232 4890 ntTSL 1 (best)2.84□□□□□ -1.962e-8■□□□□ 8.6
YBX3P16989 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.78e-14■□□□□ 8.6
YBX3P16989 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.588e-14■□□□□ 8.6
YBX3P16989 MDK-209ENST00000489525 1339 ntTSL 530.55■■■□□ 2.488e-14■□□□□ 8.6
YBX3P16989 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC30.52■■■□□ 2.488e-14■□□□□ 8.6
YBX3P16989 MDK-208ENST00000481047 775 ntTSL 230.52■■■□□ 2.488e-14■□□□□ 8.6
YBX3P16989 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC28.47■■■□□ 2.158e-14■□□□□ 8.6
YBX3P16989 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC28.05■■■□□ 2.088e-14■□□□□ 8.6
YBX3P16989 MDK-213ENST00000617138 635 ntTSL 2 BASIC27.86■■■□□ 2.058e-14■□□□□ 8.6
YBX3P16989 MDK-212ENST00000533952 477 ntAPPRIS ALT2 TSL 326.73■■□□□ 1.878e-14■□□□□ 8.6
YBX3P16989 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC26.11■■□□□ 1.778e-14■□□□□ 8.6
YBX3P16989 MDK-210ENST00000490240 603 ntTSL 1 (best)26.11■■□□□ 1.778e-14■□□□□ 8.6
YBX3P16989 MDK-211ENST00000533283 498 ntTSL 319.74■□□□□ 0.758e-14■□□□□ 8.6
YBX3P16989 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC25.56■■□□□ 1.687e-8■□□□□ 8.6
YBX3P16989 HS2ST1-203ENST00000591456 540 ntTSL 47.42□□□□□ -1.227e-8■□□□□ 8.6
YBX3P16989 RNF5-204ENST00000487940 357 ntTSL 221.35■■□□□ 1.012e-11■□□□□ 8.6
YBX3P16989 RPL10-217ENST00000492572 1656 ntTSL 520.48■□□□□ 0.871e-12■□□□□ 8.6
YBX3P16989 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.471e-12■□□□□ 8.6
YBX3P16989 RPL10-210ENST00000458500 585 ntTSL 1 (best)17.65■□□□□ 0.421e-12■□□□□ 8.6
YBX3P16989 RPL10-203ENST00000406022 748 ntTSL 3 BASIC17.21■□□□□ 0.351e-12■□□□□ 8.6
YBX3P16989 RPL10-215ENST00000489200 1519 ntTSL 217.14■□□□□ 0.331e-12■□□□□ 8.6
YBX3P16989 RPL10-214ENST00000485196 839 ntTSL 216.26■□□□□ 0.191e-12■□□□□ 8.6
YBX3P16989 RPL10-207ENST00000436473 657 ntTSL 214.78□□□□□ -0.041e-12■□□□□ 8.6
YBX3P16989 RPL10-211ENST00000467168 802 ntTSL 214.59□□□□□ -0.071e-12■□□□□ 8.6
YBX3P16989 RPL10-216ENST00000491035 1369 ntTSL 514.34□□□□□ -0.111e-12■□□□□ 8.6
YBX3P16989 RPL10-209ENST00000451365 713 ntTSL 1 (best)14.22□□□□□ -0.131e-12■□□□□ 8.6
YBX3P16989 RPL10-218ENST00000618723 2210 ntTSL 5 BASIC13.24□□□□□ -0.291e-12■□□□□ 8.6
YBX3P16989 RPL10-213ENST00000482732 1731 ntTSL 1 (best)12.38□□□□□ -0.431e-12■□□□□ 8.6
YBX3P16989 RPL10-204ENST00000424325 2318 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.441e-12■□□□□ 8.6
YBX3P16989 RPL10-201ENST00000344746 2278 ntAPPRIS P1 TSL 1 (best)11.84□□□□□ -0.511e-12■□□□□ 8.6
YBX3P16989 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.095e-11■□□□□ 8.6
YBX3P16989 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC34.33■■■■□ 3.095e-11■□□□□ 8.6
YBX3P16989 BCAP29-214ENST00000486326 512 ntTSL 232.69■■■□□ 2.823e-8■□□□□ 8.6
YBX3P16989 SF3B3-213ENST00000569687 333 ntTSL 45.94□□□□□ -1.463e-8■□□□□ 8.6
YBX3P16989 IK-205ENST00000508301 868 ntTSL 215.85■□□□□ 0.137e-8■□□□□ 8.6
YBX3P16989 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.195e-7■□□□□ 8.6
YBX3P16989 PRPF38A-202ENST00000474048 1059 ntTSL 1 (best)12.16□□□□□ -0.465e-7■□□□□ 8.6
YBX3P16989 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC25.51■■□□□ 1.674e-8■□□□□ 8.6
YBX3P16989 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.19■□□□□ 0.824e-8■□□□□ 8.6
YBX3P16989 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.774e-8■□□□□ 8.6
YBX3P16989 AL133352.1-202ENST00000527595 1423 ntAPPRIS ALT2 TSL 219.6■□□□□ 0.734e-8■□□□□ 8.6
YBX3P16989 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.494e-8■□□□□ 8.6
YBX3P16989 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.244e-8■□□□□ 8.6
YBX3P16989 AL133352.1-201ENST00000529568 1952 ntAPPRIS ALT2 TSL 215.87■□□□□ 0.134e-8■□□□□ 8.6
YBX3P16989 AL133352.1-205ENST00000533549 582 ntAPPRIS ALT2 TSL 415.82■□□□□ 0.124e-8■□□□□ 8.6
YBX3P16989 NDUFB8-203ENST00000370322 713 ntTSL 2 BASIC15.51■□□□□ 0.074e-8■□□□□ 8.6
YBX3P16989 CAPZA1-205ENST00000485542 739 ntTSL 215.09■□□□□ 0.014e-8■□□□□ 8.6
YBX3P16989 NDUFB8-204ENST00000464651 390 ntTSL 213.18□□□□□ -0.34e-8■□□□□ 8.6
YBX3P16989 AL133352.1-204ENST00000528174 538 ntAPPRIS ALT2 TSL 312.12□□□□□ -0.474e-8■□□□□ 8.6
YBX3P16989 PDCD6-208ENST00000511482 878 ntTSL 511.69□□□□□ -0.544e-8■□□□□ 8.6
YBX3P16989 PDCD6-209ENST00000512466 3763 ntTSL 211.13□□□□□ -0.634e-8■□□□□ 8.6
YBX3P16989 SLC6A6-201ENST00000452151 284 ntTSL 510.48□□□□□ -0.734e-8■□□□□ 8.6
YBX3P16989 PDCD6-205ENST00000507473 486 ntTSL 38.95□□□□□ -0.984e-8■□□□□ 8.6
YBX3P16989 EEF1A1-205ENST00000455918 701 ntTSL 227.9■■■□□ 2.061e-323■□□□□ 8.6
YBX3P16989 EEF1A1-204ENST00000356303 635 ntTSL 212.33□□□□□ -0.441e-323■□□□□ 8.6
YBX3P16989 EEF1A1-209ENST00000495333 958 ntTSL 59.18□□□□□ -0.941e-323■□□□□ 8.6
YBX3P16989 EEF1A1-206ENST00000488500 792 ntTSL 28.2□□□□□ -1.11e-323■□□□□ 8.6
YBX3P16989 EEF1A1-208ENST00000491404 633 ntTSL 37.88□□□□□ -1.151e-323■□□□□ 8.6
YBX3P16989 PLD3-209ENST00000475983 731 ntTSL 216.34■□□□□ 0.211e-16■□□□□ 8.6
YBX3P16989 MFN2-204ENST00000484391 294 ntTSL 319.97■□□□□ 0.795e-9■□□□□ 8.6
YBX3P16989 MFN2-206ENST00000497302 645 ntTSL 217.41■□□□□ 0.385e-9■□□□□ 8.6
YBX3P16989 MFN2-202ENST00000412236 489 ntTSL 36.83□□□□□ -1.325e-9■□□□□ 8.6
YBX3P16989 EIF3M-211ENST00000532054 532 ntTSL 222.09■■□□□ 1.131e-25■□□□□ 8.6
YBX3P16989 EIF3M-209ENST00000531186 565 ntTSL 218.75■□□□□ 0.591e-25■□□□□ 8.6
YBX3P16989 POLR2G-204ENST00000526368 710 ntTSL 210.42□□□□□ -0.745e-8■□□□□ 8.6
YBX3P16989 HDLBP-238ENST00000479894 840 ntTSL 522.34■■□□□ 1.171e-9■□□□□ 8.6
YBX3P16989 PTP4A1-206ENST00000627002 447 ntTSL 5 BASIC8.87□□□□□ -0.991e-9■□□□□ 8.6
YBX3P16989 B2M-210ENST00000560681 572 ntTSL 421.86■■□□□ 1.096e-21■□□□□ 8.6
YBX3P16989 B2M-207ENST00000559907 499 ntTSL 318.55■□□□□ 0.566e-21■□□□□ 8.6
YBX3P16989 B2M-202ENST00000544417 933 ntTSL 5 BASIC15.87■□□□□ 0.136e-21■□□□□ 8.6
YBX3P16989 B2M-208ENST00000559916 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.256e-21■□□□□ 8.6
YBX3P16989 B2M-206ENST00000559720 1220 ntTSL 513.14□□□□□ -0.316e-21■□□□□ 8.6
YBX3P16989 B2M-212ENST00000561424 604 ntTSL 313.14□□□□□ -0.316e-21■□□□□ 8.6
YBX3P16989 B2M-203ENST00000557901 407 ntTSL 1 (best)10.85□□□□□ -0.676e-21■□□□□ 8.6
YBX3P16989 B2M-204ENST00000558401 1715 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.776e-21■□□□□ 8.6
YBX3P16989 B2M-201ENST00000349264 732 ntTSL 37.82□□□□□ -1.166e-21■□□□□ 8.6
YBX3P16989 B2M-205ENST00000559220 580 ntTSL 57.57□□□□□ -1.26e-21■□□□□ 8.6
YBX3P16989 MAN2A2-228ENST00000561047 1057 ntTSL 523.54■■□□□ 1.366e-11■□□□□ 8.6
YBX3P16989 MAN2A2-213ENST00000559374 851 ntTSL 522.28■■□□□ 1.166e-11■□□□□ 8.6
YBX3P16989 MAN2A2-224ENST00000560616 988 ntTSL 520.42■□□□□ 0.866e-11■□□□□ 8.6
YBX3P16989 DDX49-208ENST00000599156 633 ntTSL 522.29■■□□□ 1.162e-6■□□□□ 8.6
YBX3P16989 DDX49-213ENST00000602113 1691 ntTSL 1 (best)20.84■□□□□ 0.932e-6■□□□□ 8.6
YBX3P16989 DDX49-207ENST00000598972 753 ntTSL 319.33■□□□□ 0.682e-6■□□□□ 8.6
Retrieved 100 of 29,075 protein–RNA pairs in 628.9 ms