RNA–Protein interactions for RNA: ENST00000569687.1

SF3B3-213, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 333 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-213ENST00000569687 CHIC1Q5VXU3 224 aa12.42□□□□□ -0.42
SF3B3-213ENST00000569687 AEBP2Q6ZN18 517 aaPredicted RBP12.18□□□□□ -0.46
SF3B3-213ENST00000569687 NISCHQ9Y2I1 1504 aa11.71□□□□□ -0.53
SF3B3-213ENST00000569687 PHF23Q9BUL5 403 aaPredicted RBP11.02□□□□□ -0.65
SF3B3-213ENST00000569687 PLPPR3Q6T4P5 718 aa10.32□□□□□ -0.76
SF3B3-213ENST00000569687 CCDC180Q9P1Z9 1646 aa10.25□□□□□ -0.77
SF3B3-213ENST00000569687 SENP3Q9H4L4 574 aaPredicted RBP10.18□□□□□ -0.78
SF3B3-213ENST00000569687 ZCCHC6Q5VYS8 1495 aaKnown RBP9.85□□□□□ -0.83
SF3B3-213ENST00000569687 DCAF1Q9Y4B6 1507 aa9.72□□□□□ -0.85
SF3B3-213ENST00000569687 ADRA2BP18089 450 aa9.72□□□□□ -0.85
SF3B3-213ENST00000569687 EHMT2Q96KQ7 1210 aa9.72□□□□□ -0.85
SF3B3-213ENST00000569687 ABCC9O60706 1549 aa9.72□□□□□ -0.85
SF3B3-213ENST00000569687 KCNA4P22459 653 aa9.66□□□□□ -0.86
SF3B3-213ENST00000569687 MYO15BQ96JP2 1530 aa9.61□□□□□ -0.87
SF3B3-213ENST00000569687 DCAF8L2P0C7V8 631 aa9.61□□□□□ -0.87
SF3B3-213ENST00000569687 SHROOM4Q9ULL8 1493 aa9.6□□□□□ -0.87
SF3B3-213ENST00000569687 NACADO15069 1562 aa9.56□□□□□ -0.88
SF3B3-213ENST00000569687 PPP6R1Q9UPN7 881 aa9.55□□□□□ -0.88
SF3B3-213ENST00000569687 RB1CC1Q8TDY2 1594 aa9.49□□□□□ -0.89
SF3B3-213ENST00000569687 FOXD1Q16676 465 aa9.43□□□□□ -0.9
SF3B3-213ENST00000569687 SCRIBQ14160 1630 aa9.39□□□□□ -0.91
SF3B3-213ENST00000569687 SUPT5HO00267 1087 aaKnown RBP9.38□□□□□ -0.91
SF3B3-213ENST00000569687 CSRNP3Q8WYN3 585 aa9.33□□□□□ -0.92
SF3B3-213ENST00000569687 SLC4A1APQ9BWU0 796 aaKnown RBP9.28□□□□□ -0.92
SF3B3-213ENST00000569687 UNC13AQ9UPW8 1703 aa9.27□□□□□ -0.93
SF3B3-213ENST00000569687 BICRAQ9NZM4 1560 aa9.2□□□□□ -0.94
SF3B3-213ENST00000569687 PPP4R3CPQ6ZMV5 832 aa9.2□□□□□ -0.94
SF3B3-213ENST00000569687 RSF1Q96T23 1441 aaPredicted RBP9.17□□□□□ -0.94
SF3B3-213ENST00000569687 PABPN1Q86U42 306 aaKnown RBP eCLIP9.13□□□□□ -0.95
SF3B3-213ENST00000569687 CECR2Q9BXF3 1484 aa9.08□□□□□ -0.96
SF3B3-213ENST00000569687 NCBP3Q53F19 620 aaKnown RBP9.08□□□□□ -0.96
SF3B3-213ENST00000569687 BAZ1AQ9NRL2 1556 aaPredicted RBP9.05□□□□□ -0.96
SF3B3-213ENST00000569687 MROH2BQ7Z745 1585 aa9.03□□□□□ -0.96
SF3B3-213ENST00000569687 SMARCA4P51532 1647 aa9.02□□□□□ -0.97
SF3B3-213ENST00000569687 PIAS4Q8N2W9 510 aaPredicted RBP9.01□□□□□ -0.97
SF3B3-213ENST00000569687 NPM3O75607 178 aaKnown RBP8.99□□□□□ -0.97
SF3B3-213ENST00000569687 WIZO95785 1651 aa8.94□□□□□ -0.98
SF3B3-213ENST00000569687 EIF4G1Q04637 1599 aaKnown RBP8.93□□□□□ -0.98
SF3B3-213ENST00000569687 PEG3Q9GZU2 1588 aa8.92□□□□□ -0.98
SF3B3-213ENST00000569687 ZBTB22O15209 634 aa8.92□□□□□ -0.98
SF3B3-213ENST00000569687 SMARCA2P51531 1590 aa8.88□□□□□ -0.99
SF3B3-213ENST00000569687 ATAD2BQ9ULI0 1458 aa8.88□□□□□ -0.99
SF3B3-213ENST00000569687 TOP2AP11388 1531 aaKnown RBP8.87□□□□□ -0.99
SF3B3-213ENST00000569687 TRIM41Q8WV44 630 aa8.86□□□□□ -0.99
SF3B3-213ENST00000569687 CCDC88BA6NC98 1476 aa8.83□□□□□ -1
SF3B3-213ENST00000569687 NCAPD3P42695 1498 aa8.82□□□□□ -1
SF3B3-213ENST00000569687 BAZ1BQ9UIG0 1483 aaKnown RBP8.82□□□□□ -1
SF3B3-213ENST00000569687 HMGXB3Q12766 1538 aa8.81□□□□□ -1
SF3B3-213ENST00000569687 CC2D2AQ9P2K1 1620 aa8.81□□□□□ -1
SF3B3-213ENST00000569687 LOC105371045A0A1W2PR82 267 aa8.78□□□□□ -1
SF3B3-213ENST00000569687 CNKSR2Q8WXI2 1034 aa8.78□□□□□ -1
SF3B3-213ENST00000569687 SLC24A1O60721 1099 aa8.76□□□□□ -1.01
SF3B3-213ENST00000569687 RTN4Q9NQC3 1192 aaKnown RBP8.68□□□□□ -1.02
SF3B3-213ENST00000569687 FOXD4L1Q9NU39 408 aa8.68□□□□□ -1.02
SF3B3-213ENST00000569687 SCAF1Q9H7N4 1312 aaKnown RBP8.68□□□□□ -1.02
SF3B3-213ENST00000569687 FAM9AQ8IZU1 332 aaPredicted RBP8.64□□□□□ -1.03
SF3B3-213ENST00000569687 EEA1Q15075 1411 aa8.63□□□□□ -1.03
SF3B3-213ENST00000569687 AMER1Q5JTC6 1135 aaPredicted RBP8.62□□□□□ -1.03
SF3B3-213ENST00000569687 DNAJC5BQ9UF47 199 aa8.61□□□□□ -1.03
SF3B3-213ENST00000569687 ABCC8Q09428 1581 aa8.61□□□□□ -1.03
SF3B3-213ENST00000569687 CFTRP13569 1480 aa8.6□□□□□ -1.03
SF3B3-213ENST00000569687 WRNQ14191 1432 aaPredicted RBP eCLIP8.6□□□□□ -1.03
SF3B3-213ENST00000569687 CADPSQ9ULU8 1353 aa8.58□□□□□ -1.04
SF3B3-213ENST00000569687 TRIM26Q12899 539 aaPredicted RBP8.56□□□□□ -1.04
SF3B3-213ENST00000569687 SOGA1O94964 1423 aa8.55□□□□□ -1.04
SF3B3-213ENST00000569687 PCGF6Q9BYE7 350 aa8.55□□□□□ -1.04
SF3B3-213ENST00000569687 PRDM2Q13029 1718 aa8.54□□□□□ -1.04
SF3B3-213ENST00000569687 LAMC3Q9Y6N6 1575 aa8.53□□□□□ -1.04
SF3B3-213ENST00000569687 TNIKQ9UKE5 1360 aa8.53□□□□□ -1.04
SF3B3-213ENST00000569687 MAPK8IP2Q13387 824 aaPredicted RBP8.53□□□□□ -1.04
SF3B3-213ENST00000569687 NESP48681 1621 aa8.51□□□□□ -1.05
SF3B3-213ENST00000569687 SYNJ1O43426 1573 aa8.5□□□□□ -1.05
SF3B3-213ENST00000569687 RUSC2Q8N2Y8 1516 aa8.49□□□□□ -1.05
SF3B3-213ENST00000569687 HRCP23327 699 aa8.49□□□□□ -1.05
SF3B3-213ENST00000569687 FANCD2Q9BXW9 1451 aa8.49□□□□□ -1.05
SF3B3-213ENST00000569687 TOP2BQ02880 1626 aa8.48□□□□□ -1.05
SF3B3-213ENST00000569687 RNF216Q9NWF9 866 aaPredicted RBP8.47□□□□□ -1.05
SF3B3-213ENST00000569687 PDS5BQ9NTI5 1447 aa8.46□□□□□ -1.05
SF3B3-213ENST00000569687 BIVM-ERCC5R4GMW8 1640 aa8.46□□□□□ -1.06
SF3B3-213ENST00000569687 GOLGA3Q08378 1498 aa8.45□□□□□ -1.06
SF3B3-213ENST00000569687 CUX1P39880 1505 aa8.45□□□□□ -1.06
SF3B3-213ENST00000569687 CEP164Q9UPV0 1460 aa8.45□□□□□ -1.06
SF3B3-213ENST00000569687 UBTFP17480 764 aaKnown RBP8.44□□□□□ -1.06
SF3B3-213ENST00000569687 KIF21BO75037 1637 aa8.43□□□□□ -1.06
SF3B3-213ENST00000569687 CEP162Q5TB80 1403 aa8.42□□□□□ -1.06
SF3B3-213ENST00000569687 KIF21AQ7Z4S6 1674 aa8.41□□□□□ -1.06
SF3B3-213ENST00000569687 DNMBPQ6XZF7 1577 aa8.4□□□□□ -1.06
SF3B3-213ENST00000569687 MSH5O43196 834 aa8.4□□□□□ -1.06
SF3B3-213ENST00000569687 KIF27Q86VH2 1401 aa8.39□□□□□ -1.07
SF3B3-213ENST00000569687 FKBP8Q14318 412 aa8.39□□□□□ -1.07
SF3B3-213ENST00000569687 URB2Q14146 1524 aaKnown RBP8.39□□□□□ -1.07
SF3B3-213ENST00000569687 TOPBP1Q92547 1522 aa8.39□□□□□ -1.07
SF3B3-213ENST00000569687 PRXQ9BXM0 1461 aa8.38□□□□□ -1.07
SF3B3-213ENST00000569687 FGD5Q6ZNL6 1462 aa8.37□□□□□ -1.07
SF3B3-213ENST00000569687 ERICH3Q5RHP9 1530 aa8.36□□□□□ -1.07
SF3B3-213ENST00000569687 SLC4A2P04920 1241 aa8.36□□□□□ -1.07
SF3B3-213ENST00000569687 MRC2Q9UBG0 1479 aa8.36□□□□□ -1.07
SF3B3-213ENST00000569687 ERCC6Q03468 1493 aa8.35□□□□□ -1.07
SF3B3-213ENST00000569687 RAPGEF2Q9Y4G8 1499 aa8.35□□□□□ -1.07
SF3B3-213ENST00000569687 ZEB1P37275 1124 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms