RNA–Protein interactions for RNA: ENST00000627002.1

PTP4A1-206, Transcript of protein tyrosine phosphatase type IVA, member 1, humanhuman

TSL 5 BASIC

Gene PTP4A1, Length 447 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1-206ENST00000627002 AEBP2Q6ZN18 517 aaPredicted RBP17.77■□□□□ 0.44
PTP4A1-206ENST00000627002 NISCHQ9Y2I1 1504 aa17.2■□□□□ 0.34
PTP4A1-206ENST00000627002 CHIC1Q5VXU3 224 aa16.92■□□□□ 0.3
PTP4A1-206ENST00000627002 CCDC180Q9P1Z9 1646 aa15.03■□□□□ -0
PTP4A1-206ENST00000627002 SENP3Q9H4L4 574 aaPredicted RBP14.98□□□□□ -0.01
PTP4A1-206ENST00000627002 PHF23Q9BUL5 403 aaPredicted RBP14.92□□□□□ -0.02
PTP4A1-206ENST00000627002 ABCC9O60706 1549 aa14.46□□□□□ -0.09
PTP4A1-206ENST00000627002 ZCCHC6Q5VYS8 1495 aaKnown RBP14.44□□□□□ -0.1
PTP4A1-206ENST00000627002 DCAF1Q9Y4B6 1507 aa14.26□□□□□ -0.13
PTP4A1-206ENST00000627002 DCAF8L2P0C7V8 631 aa14.19□□□□□ -0.14
PTP4A1-206ENST00000627002 MYO15BQ96JP2 1530 aa14.14□□□□□ -0.15
PTP4A1-206ENST00000627002 NACADO15069 1562 aa14.05□□□□□ -0.16
PTP4A1-206ENST00000627002 FOXD1Q16676 465 aa14.03□□□□□ -0.16
PTP4A1-206ENST00000627002 RB1CC1Q8TDY2 1594 aa13.93□□□□□ -0.18
PTP4A1-206ENST00000627002 SHROOM4Q9ULL8 1493 aa13.92□□□□□ -0.18
PTP4A1-206ENST00000627002 DNAJC5BQ9UF47 199 aa13.79□□□□□ -0.2
PTP4A1-206ENST00000627002 SCRIBQ14160 1630 aa13.77□□□□□ -0.21
PTP4A1-206ENST00000627002 UNC13AQ9UPW8 1703 aa13.51□□□□□ -0.25
PTP4A1-206ENST00000627002 PLPPR3Q6T4P5 718 aa13.51□□□□□ -0.25
PTP4A1-206ENST00000627002 PABPN1Q86U42 306 aaKnown RBP eCLIP13.47□□□□□ -0.25
PTP4A1-206ENST00000627002 BICRAQ9NZM4 1560 aa13.45□□□□□ -0.26
PTP4A1-206ENST00000627002 SUPT5HO00267 1087 aaKnown RBP13.37□□□□□ -0.27
PTP4A1-206ENST00000627002 CECR2Q9BXF3 1484 aa13.33□□□□□ -0.28
PTP4A1-206ENST00000627002 RSF1Q96T23 1441 aaPredicted RBP13.3□□□□□ -0.28
PTP4A1-206ENST00000627002 BAZ1AQ9NRL2 1556 aaPredicted RBP13.3□□□□□ -0.28
PTP4A1-206ENST00000627002 PPP6R1Q9UPN7 881 aa13.27□□□□□ -0.29
PTP4A1-206ENST00000627002 MROH2BQ7Z745 1585 aa13.25□□□□□ -0.29
PTP4A1-206ENST00000627002 SMARCA4P51532 1647 aa13.21□□□□□ -0.29
PTP4A1-206ENST00000627002 ADRA2BP18089 450 aa13.19□□□□□ -0.3
PTP4A1-206ENST00000627002 WIZO95785 1651 aa13.11□□□□□ -0.31
PTP4A1-206ENST00000627002 PIAS4Q8N2W9 510 aaPredicted RBP13.1□□□□□ -0.31
PTP4A1-206ENST00000627002 PEG3Q9GZU2 1588 aa13.09□□□□□ -0.31
PTP4A1-206ENST00000627002 EIF4G1Q04637 1599 aaKnown RBP13.07□□□□□ -0.32
PTP4A1-206ENST00000627002 SMARCA2P51531 1590 aa13.06□□□□□ -0.32
PTP4A1-206ENST00000627002 ATAD2BQ9ULI0 1458 aa13.04□□□□□ -0.32
PTP4A1-206ENST00000627002 TOP2AP11388 1531 aaKnown RBP13.03□□□□□ -0.32
PTP4A1-206ENST00000627002 CC2D2AQ9P2K1 1620 aa13□□□□□ -0.33
PTP4A1-206ENST00000627002 MSH5O43196 834 aa12.97□□□□□ -0.33
PTP4A1-206ENST00000627002 BAZ1BQ9UIG0 1483 aaKnown RBP12.97□□□□□ -0.33
PTP4A1-206ENST00000627002 NCAPD3P42695 1498 aa12.96□□□□□ -0.34
PTP4A1-206ENST00000627002 HMGXB3Q12766 1538 aa12.93□□□□□ -0.34
PTP4A1-206ENST00000627002 DNAJC5Q9H3Z4 198 aa12.93□□□□□ -0.34
PTP4A1-206ENST00000627002 CCDC88BA6NC98 1476 aa12.89□□□□□ -0.35
PTP4A1-206ENST00000627002 CFTRP13569 1480 aa12.65□□□□□ -0.38
PTP4A1-206ENST00000627002 CADPSQ9ULU8 1353 aa12.62□□□□□ -0.39
PTP4A1-206ENST00000627002 TRIM41Q8WV44 630 aa12.62□□□□□ -0.39
PTP4A1-206ENST00000627002 CUX2O14529 1486 aa12.61□□□□□ -0.39
PTP4A1-206ENST00000627002 ERCC6Q03468 1493 aa12.58□□□□□ -0.4
PTP4A1-206ENST00000627002 WRNQ14191 1432 aaPredicted RBP eCLIP12.54□□□□□ -0.4
PTP4A1-206ENST00000627002 ABCC8Q09428 1581 aa12.54□□□□□ -0.4
PTP4A1-206ENST00000627002 LAMC3Q9Y6N6 1575 aa12.52□□□□□ -0.4
PTP4A1-206ENST00000627002 POTEDQ86YR6 584 aa12.52□□□□□ -0.41
PTP4A1-206ENST00000627002 PRDM2Q13029 1718 aa12.5□□□□□ -0.41
PTP4A1-206ENST00000627002 FANCD2Q9BXW9 1451 aa12.46□□□□□ -0.41
PTP4A1-206ENST00000627002 NESP48681 1621 aa12.46□□□□□ -0.41
PTP4A1-206ENST00000627002 PDS5BQ9NTI5 1447 aa12.45□□□□□ -0.42
PTP4A1-206ENST00000627002 SYNJ1O43426 1573 aa12.44□□□□□ -0.42
PTP4A1-206ENST00000627002 TOP2BQ02880 1626 aa12.44□□□□□ -0.42
PTP4A1-206ENST00000627002 CUX1P39880 1505 aa12.41□□□□□ -0.42
PTP4A1-206ENST00000627002 BIVM-ERCC5R4GMW8 1640 aa12.4□□□□□ -0.42
PTP4A1-206ENST00000627002 CEP164Q9UPV0 1460 aa12.4□□□□□ -0.42
PTP4A1-206ENST00000627002 EEA1Q15075 1411 aa12.38□□□□□ -0.43
PTP4A1-206ENST00000627002 DNMBPQ6XZF7 1577 aa12.35□□□□□ -0.43
PTP4A1-206ENST00000627002 FAM9AQ8IZU1 332 aaPredicted RBP12.33□□□□□ -0.44
PTP4A1-206ENST00000627002 SOGA1O94964 1423 aa12.32□□□□□ -0.44
PTP4A1-206ENST00000627002 TOPBP1Q92547 1522 aa12.32□□□□□ -0.44
PTP4A1-206ENST00000627002 FGD5Q6ZNL6 1462 aa12.29□□□□□ -0.44
PTP4A1-206ENST00000627002 URB2Q14146 1524 aaKnown RBP12.29□□□□□ -0.44
PTP4A1-206ENST00000627002 KIF21AQ7Z4S6 1674 aa12.29□□□□□ -0.44
PTP4A1-206ENST00000627002 MRC2Q9UBG0 1479 aa12.28□□□□□ -0.44
PTP4A1-206ENST00000627002 CSRNP3Q8WYN3 585 aa12.27□□□□□ -0.45
PTP4A1-206ENST00000627002 LOC105371045A0A1W2PR82 267 aa12.25□□□□□ -0.45
PTP4A1-206ENST00000627002 KIF27Q86VH2 1401 aa12.25□□□□□ -0.45
PTP4A1-206ENST00000627002 RUSC2Q8N2Y8 1516 aa12.25□□□□□ -0.45
PTP4A1-206ENST00000627002 POLA1P09884 1462 aaPredicted RBP12.24□□□□□ -0.45
PTP4A1-206ENST00000627002 WDR62O43379 1518 aa12.21□□□□□ -0.46
PTP4A1-206ENST00000627002 ABCA10Q8WWZ4 1543 aa12.21□□□□□ -0.46
PTP4A1-206ENST00000627002 THOC2Q8NI27 1593 aaKnown RBP12.19□□□□□ -0.46
PTP4A1-206ENST00000627002 RAD54L2Q9Y4B4 1467 aa12.18□□□□□ -0.46
PTP4A1-206ENST00000627002 GOLGA3Q08378 1498 aa12.16□□□□□ -0.46
PTP4A1-206ENST00000627002 KIF21BO75037 1637 aa12.16□□□□□ -0.46
PTP4A1-206ENST00000627002 IFT140Q96RY7 1462 aa12.14□□□□□ -0.47
PTP4A1-206ENST00000627002 PRXQ9BXM0 1461 aa12.14□□□□□ -0.47
PTP4A1-206ENST00000627002 IGF1RP08069 1367 aa12.13□□□□□ -0.47
PTP4A1-206ENST00000627002 EHMT2Q96KQ7 1210 aa12.12□□□□□ -0.47
PTP4A1-206ENST00000627002 WDR97A6NE52 1622 aa12.11□□□□□ -0.47
PTP4A1-206ENST00000627002 TARBP1Q13395 1621 aaKnown RBP12.11□□□□□ -0.47
PTP4A1-206ENST00000627002 TNIKQ9UKE5 1360 aa12.11□□□□□ -0.47
PTP4A1-206ENST00000627002 ERICH3Q5RHP9 1530 aa12.11□□□□□ -0.47
PTP4A1-206ENST00000627002 UBTFP17480 764 aaKnown RBP12.1□□□□□ -0.47
PTP4A1-206ENST00000627002 MAPK8IP2Q13387 824 aaPredicted RBP12.1□□□□□ -0.47
PTP4A1-206ENST00000627002 GAPVD1Q14C86 1478 aa12.08□□□□□ -0.47
PTP4A1-206ENST00000627002 RAPGEF2Q9Y4G8 1499 aa12.08□□□□□ -0.47
PTP4A1-206ENST00000627002 ABCA5Q8WWZ7 1642 aa12.08□□□□□ -0.48
PTP4A1-206ENST00000627002 TDRD9Q8NDG6 1382 aaKnown RBP12.08□□□□□ -0.48
PTP4A1-206ENST00000627002 CARMIL1Q5VZK9 1371 aa12.07□□□□□ -0.48
PTP4A1-206ENST00000627002 OSCARQ8IYS5 282 aa12.06□□□□□ -0.48
PTP4A1-206ENST00000627002 CUL7Q14999 1698 aa12.04□□□□□ -0.48
PTP4A1-206ENST00000627002 GRIN2BQ13224 1484 aa12.02□□□□□ -0.48
PTP4A1-206ENST00000627002 CEP162Q5TB80 1403 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms