Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
GFRA1P56159 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
GFRA1P56159 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
GFRA1P56159 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
GFRA1P56159 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC12.92□□□□□ -0.34
GFRA1P56159 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
GFRA1P56159 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
GFRA1P56159 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
GFRA1P56159 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
GFRA1P56159 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
GFRA1P56159 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC12.92□□□□□ -0.34
GFRA1P56159 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
GFRA1P56159 HSPA8P5-201ENST00000456928 2069 ntBASIC12.92□□□□□ -0.34
GFRA1P56159 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
GFRA1P56159 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
GFRA1P56159 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC12.91□□□□□ -0.34
GFRA1P56159 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
GFRA1P56159 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
GFRA1P56159 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
GFRA1P56159 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 KRT8P31-201ENST00000504812 1408 ntBASIC12.91□□□□□ -0.34
GFRA1P56159 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC12.91□□□□□ -0.34
GFRA1P56159 BRD7P5-201ENST00000299197 1822 ntBASIC12.91□□□□□ -0.34
GFRA1P56159 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC12.91□□□□□ -0.34
GFRA1P56159 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
GFRA1P56159 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC12.91□□□□□ -0.34
GFRA1P56159 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC12.91□□□□□ -0.34
GFRA1P56159 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC12.91□□□□□ -0.34
GFRA1P56159 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC12.91□□□□□ -0.34
GFRA1P56159 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC12.91□□□□□ -0.34
GFRA1P56159 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 RN7SL67P-201ENST00000492147 296 ntBASIC12.91□□□□□ -0.34
GFRA1P56159 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC12.91□□□□□ -0.34
GFRA1P56159 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
GFRA1P56159 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
GFRA1P56159 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC12.91□□□□□ -0.34
GFRA1P56159 SKA2-205ENST00000580541 689 ntTSL 3 BASIC12.91□□□□□ -0.34
GFRA1P56159 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC12.91□□□□□ -0.34
GFRA1P56159 AC015967.2-201ENST00000624092 234 ntBASIC12.91□□□□□ -0.34
GFRA1P56159 AC006435.4-201ENST00000625037 234 ntBASIC12.91□□□□□ -0.34
GFRA1P56159 AL356737.1-201ENST00000634391 234 ntBASIC12.91□□□□□ -0.34
GFRA1P56159 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC12.91□□□□□ -0.34
GFRA1P56159 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
GFRA1P56159 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
GFRA1P56159 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC12.91□□□□□ -0.34
GFRA1P56159 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
GFRA1P56159 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC12.91□□□□□ -0.34
GFRA1P56159 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC12.91□□□□□ -0.34
GFRA1P56159 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
GFRA1P56159 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
GFRA1P56159 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
GFRA1P56159 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
GFRA1P56159 KRT18P9-201ENST00000604826 1300 ntBASIC12.9□□□□□ -0.34
GFRA1P56159 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
GFRA1P56159 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC12.9□□□□□ -0.34
GFRA1P56159 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC12.9□□□□□ -0.34
GFRA1P56159 LINC01815-202ENST00000641468 1409 ntBASIC12.9□□□□□ -0.34
GFRA1P56159 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
GFRA1P56159 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
GFRA1P56159 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
GFRA1P56159 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
GFRA1P56159 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
GFRA1P56159 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC12.9□□□□□ -0.34
GFRA1P56159 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
GFRA1P56159 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC12.9□□□□□ -0.34
GFRA1P56159 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC12.9□□□□□ -0.34
GFRA1P56159 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
GFRA1P56159 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
GFRA1P56159 SSR1P1-201ENST00000407630 814 ntBASIC12.9□□□□□ -0.34
GFRA1P56159 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
GFRA1P56159 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC12.9□□□□□ -0.34
GFRA1P56159 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC12.9□□□□□ -0.34
GFRA1P56159 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC12.9□□□□□ -0.34
GFRA1P56159 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC12.9□□□□□ -0.34
GFRA1P56159 AC114947.1-202ENST00000514136 344 ntBASIC12.9□□□□□ -0.34
GFRA1P56159 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC12.9□□□□□ -0.34
GFRA1P56159 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms