Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.22
SOX3P41225 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SOX3P41225 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SOX3P41225 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.71□□□□□ -0.22
SOX3P41225 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC13.71□□□□□ -0.22
SOX3P41225 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SOX3P41225 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SOX3P41225 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SOX3P41225 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
SOX3P41225 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
SOX3P41225 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
SOX3P41225 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX3P41225 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX3P41225 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
SOX3P41225 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 AC105206.1-202ENST00000314927 2368 ntBASIC13.7□□□□□ -0.22
SOX3P41225 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.7□□□□□ -0.22
SOX3P41225 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX3P41225 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC13.7□□□□□ -0.22
SOX3P41225 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.7□□□□□ -0.22
SOX3P41225 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
SOX3P41225 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC13.7□□□□□ -0.22
SOX3P41225 FAM8A2P-201ENST00000528813 1142 ntBASIC13.7□□□□□ -0.22
SOX3P41225 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.7□□□□□ -0.22
SOX3P41225 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC13.7□□□□□ -0.22
SOX3P41225 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.7□□□□□ -0.22
SOX3P41225 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX3P41225 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
SOX3P41225 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 GPR182-203ENST00000622922 591 ntBASIC13.7□□□□□ -0.22
SOX3P41225 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.7□□□□□ -0.22
SOX3P41225 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX3P41225 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX3P41225 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
SOX3P41225 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX3P41225 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
SOX3P41225 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC13.7□□□□□ -0.22
SOX3P41225 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX3P41225 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.7□□□□□ -0.22
SOX3P41225 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SOX3P41225 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.69□□□□□ -0.22
SOX3P41225 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC13.69□□□□□ -0.22
SOX3P41225 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC13.69□□□□□ -0.22
SOX3P41225 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SOX3P41225 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC13.69□□□□□ -0.22
SOX3P41225 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
SOX3P41225 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC13.69□□□□□ -0.22
SOX3P41225 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SOX3P41225 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
SOX3P41225 KRTAP10-13P-201ENST00000412914 571 ntBASIC13.69□□□□□ -0.22
SOX3P41225 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC13.69□□□□□ -0.22
SOX3P41225 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC13.69□□□□□ -0.22
SOX3P41225 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
SOX3P41225 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms