Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A2P12110 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
COL6A2P12110 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC14.34□□□□□ -0.11
COL6A2P12110 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A2P12110 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
COL6A2P12110 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A2P12110 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC14.33□□□□□ -0.11
COL6A2P12110 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.33□□□□□ -0.11
COL6A2P12110 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
COL6A2P12110 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC14.33□□□□□ -0.11
COL6A2P12110 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
COL6A2P12110 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A2P12110 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
COL6A2P12110 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
COL6A2P12110 AC236430.1-201ENST00000402231 743 ntBASIC14.33□□□□□ -0.12
COL6A2P12110 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.33□□□□□ -0.12
COL6A2P12110 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.33□□□□□ -0.12
COL6A2P12110 AK2P2-201ENST00000439142 405 ntBASIC14.33□□□□□ -0.12
COL6A2P12110 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.33□□□□□ -0.12
COL6A2P12110 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
COL6A2P12110 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
COL6A2P12110 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A2P12110 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
COL6A2P12110 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.33□□□□□ -0.12
COL6A2P12110 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.33□□□□□ -0.12
COL6A2P12110 MIR4683-201ENST00000579659 81 ntBASIC14.33□□□□□ -0.12
COL6A2P12110 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.33□□□□□ -0.12
COL6A2P12110 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
COL6A2P12110 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 AL591122.2-201ENST00000624125 1853 ntBASIC14.33□□□□□ -0.12
COL6A2P12110 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A2P12110 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
COL6A2P12110 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
COL6A2P12110 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC14.32□□□□□ -0.12
COL6A2P12110 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.32□□□□□ -0.12
COL6A2P12110 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
COL6A2P12110 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A2P12110 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC14.32□□□□□ -0.12
COL6A2P12110 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A2P12110 AC092933.1-201ENST00000393644 945 ntBASIC14.32□□□□□ -0.12
COL6A2P12110 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
COL6A2P12110 AC010141.1-201ENST00000411585 623 ntBASIC14.32□□□□□ -0.12
COL6A2P12110 AP006294.1-201ENST00000415407 339 ntBASIC14.32□□□□□ -0.12
COL6A2P12110 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A2P12110 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A2P12110 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A2P12110 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.32□□□□□ -0.12
COL6A2P12110 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 BCRP1-201ENST00000444246 691 ntBASIC14.32□□□□□ -0.12
COL6A2P12110 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.32□□□□□ -0.12
COL6A2P12110 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.32□□□□□ -0.12
COL6A2P12110 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.32□□□□□ -0.12
COL6A2P12110 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A2P12110 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.32□□□□□ -0.12
COL6A2P12110 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.32□□□□□ -0.12
COL6A2P12110 AL358472.3-201ENST00000608147 415 ntBASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms