Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 NPTN-IT1-201ENST00000628401 2283 ntBASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 MKRN5P-201ENST00000445263 1467 ntBASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 SOCS2P1-201ENST00000417727 557 ntBASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 AC104596.2-201ENST00000512793 793 ntBASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 IGHV3-42-201ENST00000520410 361 ntBASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 Z98257.2-202ENST00000641138 1548 ntBASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
CCDC28BQ9BUN5 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 MIR943-201ENST00000401286 94 ntBASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 PUDPP3-201ENST00000445368 636 ntBASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 FAM86GP-201ENST00000448322 971 ntBASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 AC004967.1-201ENST00000453589 447 ntBASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 AC005586.2-201ENST00000563946 837 ntBASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 AL031595.1-201ENST00000623969 4709 ntBASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms