RNA–Protein interactions for RNA: ENST00000374490.7

HMGCL-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCL, Length 1,600 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-203ENST00000374490 NISCHQ9Y2I1 1504 aa29.92■■■□□ 2.38
HMGCL-203ENST00000374490 ABCC9O60706 1549 aa26.56■■□□□ 1.84
HMGCL-203ENST00000374490 CCDC180Q9P1Z9 1646 aa26.34■■□□□ 1.81
HMGCL-203ENST00000374490 RB1CC1Q8TDY2 1594 aa25.21■■□□□ 1.63
HMGCL-203ENST00000374490 ZCCHC6Q5VYS8 1495 aaKnown RBP25.16■■□□□ 1.62
HMGCL-203ENST00000374490 NACADO15069 1562 aa25.01■■□□□ 1.59
HMGCL-203ENST00000374490 DNAJC5BQ9UF47 199 aa25■■□□□ 1.59
HMGCL-203ENST00000374490 DCAF8L2P0C7V8 631 aa24.97■■□□□ 1.59
HMGCL-203ENST00000374490 DCAF1Q9Y4B6 1507 aa24.75■■□□□ 1.55
HMGCL-203ENST00000374490 PABPN1Q86U42 306 aaKnown RBP eCLIP24.75■■□□□ 1.55
HMGCL-203ENST00000374490 MYO15BQ96JP2 1530 aa24.64■■□□□ 1.53
HMGCL-203ENST00000374490 SHROOM4Q9ULL8 1493 aa24.5■■□□□ 1.51
HMGCL-203ENST00000374490 UNC13AQ9UPW8 1703 aa24.43■■□□□ 1.5
HMGCL-203ENST00000374490 BICRAQ9NZM4 1560 aa24.4■■□□□ 1.5
HMGCL-203ENST00000374490 SCRIBQ14160 1630 aa24.04■■□□□ 1.44
HMGCL-203ENST00000374490 SUPT5HO00267 1087 aaKnown RBP24■■□□□ 1.43
HMGCL-203ENST00000374490 CECR2Q9BXF3 1484 aa23.96■■□□□ 1.43
HMGCL-203ENST00000374490 CC2D2AQ9P2K1 1620 aa23.92■■□□□ 1.42
HMGCL-203ENST00000374490 EIF4G1Q04637 1599 aaKnown RBP23.87■■□□□ 1.41
HMGCL-203ENST00000374490 CHIC1Q5VXU3 224 aa23.44■■□□□ 1.34
HMGCL-203ENST00000374490 RSF1Q96T23 1441 aaPredicted RBP23.19■■□□□ 1.3
HMGCL-203ENST00000374490 BAZ1AQ9NRL2 1556 aaPredicted RBP23.14■■□□□ 1.29
HMGCL-203ENST00000374490 NCAPD3P42695 1498 aa23.12■■□□□ 1.29
HMGCL-203ENST00000374490 MROH2BQ7Z745 1585 aa23.1■■□□□ 1.29
HMGCL-203ENST00000374490 DNAJC5Q9H3Z4 198 aa23.09■■□□□ 1.29
HMGCL-203ENST00000374490 ATAD2BQ9ULI0 1458 aa23.03■■□□□ 1.28
HMGCL-203ENST00000374490 SMARCA4P51532 1647 aa23.02■■□□□ 1.28
HMGCL-203ENST00000374490 ERCC6Q03468 1493 aa22.99■■□□□ 1.27
HMGCL-203ENST00000374490 WIZO95785 1651 aa22.95■■□□□ 1.26
HMGCL-203ENST00000374490 CUX2O14529 1486 aa22.95■■□□□ 1.26
HMGCL-203ENST00000374490 SMARCA2P51531 1590 aa22.95■■□□□ 1.26
HMGCL-203ENST00000374490 HMGXB3Q12766 1538 aa22.9■■□□□ 1.26
HMGCL-203ENST00000374490 BAZ1BQ9UIG0 1483 aaKnown RBP22.81■■□□□ 1.24
HMGCL-203ENST00000374490 NESP48681 1621 aa22.74■■□□□ 1.23
HMGCL-203ENST00000374490 TOP2AP11388 1531 aaKnown RBP22.73■■□□□ 1.23
HMGCL-203ENST00000374490 PEG3Q9GZU2 1588 aa22.71■■□□□ 1.23
HMGCL-203ENST00000374490 LAMC3Q9Y6N6 1575 aa22.58■■□□□ 1.21
HMGCL-203ENST00000374490 PDS5BQ9NTI5 1447 aa22.54■■□□□ 1.2
HMGCL-203ENST00000374490 HRCP23327 699 aa22.53■■□□□ 1.2
HMGCL-203ENST00000374490 TRIM41Q8WV44 630 aa22.53■■□□□ 1.2
HMGCL-203ENST00000374490 LOC105371045A0A1W2PR82 267 aa22.53■■□□□ 1.2
HMGCL-203ENST00000374490 THOC2Q8NI27 1593 aaKnown RBP22.5■■□□□ 1.19
HMGCL-203ENST00000374490 CCDC88BA6NC98 1476 aa22.46■■□□□ 1.19
HMGCL-203ENST00000374490 CADPSQ9ULU8 1353 aa22.44■■□□□ 1.18
HMGCL-203ENST00000374490 PCGF6Q9BYE7 350 aa22.43■■□□□ 1.18
HMGCL-203ENST00000374490 KIF21AQ7Z4S6 1674 aa22.35■■□□□ 1.17
HMGCL-203ENST00000374490 MRC2Q9UBG0 1479 aa22.31■■□□□ 1.16
HMGCL-203ENST00000374490 TRIM26Q12899 539 aaPredicted RBP22.28■■□□□ 1.16
HMGCL-203ENST00000374490 WDR62O43379 1518 aa22.22■■□□□ 1.15
HMGCL-203ENST00000374490 CEP164Q9UPV0 1460 aa22.2■■□□□ 1.14
HMGCL-203ENST00000374490 FANCD2Q9BXW9 1451 aa22.16■■□□□ 1.14
HMGCL-203ENST00000374490 CFTRP13569 1480 aa22.12■■□□□ 1.13
HMGCL-203ENST00000374490 FAM9AQ8IZU1 332 aaPredicted RBP22.11■■□□□ 1.13
HMGCL-203ENST00000374490 ABCC8Q09428 1581 aa22.02■■□□□ 1.12
HMGCL-203ENST00000374490 URB2Q14146 1524 aaKnown RBP21.94■■□□□ 1.1
HMGCL-203ENST00000374490 OSCARQ8IYS5 282 aa21.94■■□□□ 1.1
HMGCL-203ENST00000374490 EEA1Q15075 1411 aa21.92■■□□□ 1.1
HMGCL-203ENST00000374490 PRDM2Q13029 1718 aa21.91■■□□□ 1.1
HMGCL-203ENST00000374490 ZEB1P37275 1124 aaPredicted RBP21.91■■□□□ 1.1
HMGCL-203ENST00000374490 WRNQ14191 1432 aaPredicted RBP eCLIP21.88■■□□□ 1.09
HMGCL-203ENST00000374490 SYNJ1O43426 1573 aa21.79■■□□□ 1.08
HMGCL-203ENST00000374490 PPARGC1BQ86YN6 1023 aaKnown RBP21.77■■□□□ 1.08
HMGCL-203ENST00000374490 IFT140Q96RY7 1462 aa21.77■■□□□ 1.08
HMGCL-203ENST00000374490 EHMT2Q96KQ7 1210 aa21.73■■□□□ 1.07
HMGCL-203ENST00000374490 TNIKQ9UKE5 1360 aa21.72■■□□□ 1.07
HMGCL-203ENST00000374490 TOP2BQ02880 1626 aa21.71■■□□□ 1.07
HMGCL-203ENST00000374490 TOPBP1Q92547 1522 aa21.71■■□□□ 1.07
HMGCL-203ENST00000374490 BIVM-ERCC5R4GMW8 1640 aa21.7■■□□□ 1.06
HMGCL-203ENST00000374490 ZNF608Q9ULD9 1512 aaPredicted RBP21.7■■□□□ 1.06
HMGCL-203ENST00000374490 SOGA1O94964 1423 aa21.69■■□□□ 1.06
HMGCL-203ENST00000374490 CSRNP3Q8WYN3 585 aa21.66■■□□□ 1.06
HMGCL-203ENST00000374490 CEP162Q5TB80 1403 aa21.64■■□□□ 1.05
HMGCL-203ENST00000374490 GOLGA3Q08378 1498 aa21.62■■□□□ 1.05
HMGCL-203ENST00000374490 CUX1P39880 1505 aa21.61■■□□□ 1.05
HMGCL-203ENST00000374490 DNMBPQ6XZF7 1577 aa21.6■■□□□ 1.05
HMGCL-203ENST00000374490 KIF21BO75037 1637 aa21.54■■□□□ 1.04
HMGCL-203ENST00000374490 EIF4G3O43432 1585 aaKnown RBP21.54■■□□□ 1.04
HMGCL-203ENST00000374490 RUSC2Q8N2Y8 1516 aa21.53■■□□□ 1.04
HMGCL-203ENST00000374490 RIMBP3CA6NJZ7 1639 aa21.53■■□□□ 1.04
HMGCL-203ENST00000374490 RIMBP3BA6NNM3 1639 aa21.53■■□□□ 1.04
HMGCL-203ENST00000374490 RIMBP3Q9UFD9 1639 aa21.53■■□□□ 1.04
HMGCL-203ENST00000374490 AQRO60306 1485 aaKnown RBP eCLIP21.51■■□□□ 1.03
HMGCL-203ENST00000374490 ARHGEF11O15085 1522 aa21.51■■□□□ 1.03
HMGCL-203ENST00000374490 POLA1P09884 1462 aaPredicted RBP21.48■■□□□ 1.03
HMGCL-203ENST00000374490 FBLN2P98095 1184 aa21.47■■□□□ 1.03
HMGCL-203ENST00000374490 TARBP1Q13395 1621 aaKnown RBP21.45■■□□□ 1.03
HMGCL-203ENST00000374490 UBTFP17480 764 aaKnown RBP21.44■■□□□ 1.02
HMGCL-203ENST00000374490 CYB5RLQ6IPT4 315 aa21.43■■□□□ 1.02
HMGCL-203ENST00000374490 RAD54L2Q9Y4B4 1467 aa21.4■■□□□ 1.02
HMGCL-203ENST00000374490 FGD5Q6ZNL6 1462 aa21.39■■□□□ 1.01
HMGCL-203ENST00000374490 TDRD9Q8NDG6 1382 aaKnown RBP21.39■■□□□ 1.01
HMGCL-203ENST00000374490 KIF27Q86VH2 1401 aa21.34■■□□□ 1.01
HMGCL-203ENST00000374490 CHD1O14646 1710 aa21.32■■□□□ 1
HMGCL-203ENST00000374490 SNAPC4Q5SXM2 1469 aa21.3■■□□□ 1
HMGCL-203ENST00000374490 CHMP7Q8WUX9 453 aaPredicted RBP21.29■■□□□ 1
HMGCL-203ENST00000374490 ARAP1Q96P48 1450 aa21.29■■□□□ 1
HMGCL-203ENST00000374490 CLIP1P30622 1438 aa21.29■■□□□ 1
HMGCL-203ENST00000374490 WDR97A6NE52 1622 aa21.28■■□□□ 1
HMGCL-203ENST00000374490 TRHP20396 242 aaPredicted RBP21.26■□□□□ 0.99
HMGCL-203ENST00000374490 MAGI1Q96QZ7 1491 aaPredicted RBP21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 172.1 ms