Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
CX3CL1P78423 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC11.76□□□□□ -0.53
CX3CL1P78423 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC11.76□□□□□ -0.53
CX3CL1P78423 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC11.76□□□□□ -0.53
CX3CL1P78423 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC11.76□□□□□ -0.53
CX3CL1P78423 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CX3CL1P78423 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
CX3CL1P78423 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
CX3CL1P78423 MIR1909-201ENST00000411312 80 ntBASIC11.76□□□□□ -0.53
CX3CL1P78423 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC11.76□□□□□ -0.53
CX3CL1P78423 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC11.76□□□□□ -0.53
CX3CL1P78423 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC11.76□□□□□ -0.53
CX3CL1P78423 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 ACA64.2-201ENST00000459014 129 ntBASIC11.76□□□□□ -0.53
CX3CL1P78423 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC11.76□□□□□ -0.53
CX3CL1P78423 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
CX3CL1P78423 AC023310.1-201ENST00000554836 735 ntBASIC11.76□□□□□ -0.53
CX3CL1P78423 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC11.76□□□□□ -0.53
CX3CL1P78423 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC11.76□□□□□ -0.53
CX3CL1P78423 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CX3CL1P78423 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC11.76□□□□□ -0.53
CX3CL1P78423 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
CX3CL1P78423 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC11.76□□□□□ -0.53
CX3CL1P78423 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
CX3CL1P78423 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC11.76□□□□□ -0.53
CX3CL1P78423 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC11.76□□□□□ -0.53
CX3CL1P78423 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
CX3CL1P78423 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CX3CL1P78423 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC11.76□□□□□ -0.53
CX3CL1P78423 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 MVK-214ENST00000629016 1591 ntTSL 5 BASIC11.75□□□□□ -0.53
CX3CL1P78423 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 AC015688.4-201ENST00000580780 1647 ntBASIC11.75□□□□□ -0.53
CX3CL1P78423 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
CX3CL1P78423 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
CX3CL1P78423 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
CX3CL1P78423 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC11.75□□□□□ -0.53
CX3CL1P78423 AC026954.1-201ENST00000429771 1293 ntBASIC11.75□□□□□ -0.53
CX3CL1P78423 PUDPP3-201ENST00000445368 636 ntBASIC11.75□□□□□ -0.53
CX3CL1P78423 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC11.75□□□□□ -0.53
CX3CL1P78423 PFN2-215ENST00000497148 743 ntTSL 4 BASIC11.75□□□□□ -0.53
CX3CL1P78423 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC11.75□□□□□ -0.53
CX3CL1P78423 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC11.75□□□□□ -0.53
CX3CL1P78423 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC11.75□□□□□ -0.53
CX3CL1P78423 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC11.75□□□□□ -0.53
CX3CL1P78423 MIR4683-201ENST00000579659 81 ntBASIC11.75□□□□□ -0.53
CX3CL1P78423 AC073413.1-201ENST00000603927 732 ntBASIC11.75□□□□□ -0.53
CX3CL1P78423 ZACNP1-201ENST00000612259 710 ntBASIC11.75□□□□□ -0.53
CX3CL1P78423 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
CX3CL1P78423 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
CX3CL1P78423 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
CX3CL1P78423 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
CX3CL1P78423 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
CX3CL1P78423 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms