Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
COL8A1P27658 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC12.65□□□□□ -0.38
COL8A1P27658 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC12.65□□□□□ -0.38
COL8A1P27658 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
COL8A1P27658 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC12.65□□□□□ -0.38
COL8A1P27658 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
COL8A1P27658 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 AL929302.1-201ENST00000426556 871 ntBASIC12.65□□□□□ -0.38
COL8A1P27658 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC12.65□□□□□ -0.38
COL8A1P27658 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC12.65□□□□□ -0.38
COL8A1P27658 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC12.65□□□□□ -0.38
COL8A1P27658 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC12.65□□□□□ -0.38
COL8A1P27658 BCL2L12P1-201ENST00000508390 733 ntBASIC12.65□□□□□ -0.38
COL8A1P27658 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC12.65□□□□□ -0.38
COL8A1P27658 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC12.65□□□□□ -0.38
COL8A1P27658 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC12.65□□□□□ -0.38
COL8A1P27658 OR5BD1P-201ENST00000532527 817 ntBASIC12.65□□□□□ -0.38
COL8A1P27658 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC12.65□□□□□ -0.38
COL8A1P27658 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC12.65□□□□□ -0.38
COL8A1P27658 USB1-205ENST00000561743 1135 ntTSL 3 BASIC12.65□□□□□ -0.38
COL8A1P27658 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC12.65□□□□□ -0.38
COL8A1P27658 MIR2392-201ENST00000584881 84 ntBASIC12.65□□□□□ -0.38
COL8A1P27658 CYP4F36P-201ENST00000589193 186 ntBASIC12.65□□□□□ -0.38
COL8A1P27658 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC12.65□□□□□ -0.38
COL8A1P27658 AL133445.2-201ENST00000611191 527 ntBASIC12.65□□□□□ -0.38
COL8A1P27658 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
COL8A1P27658 HLA-DQB2-231ENST00000435145 2026 ntBASIC12.65□□□□□ -0.38
COL8A1P27658 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC12.65□□□□□ -0.38
COL8A1P27658 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.65□□□□□ -0.38
COL8A1P27658 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
COL8A1P27658 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC12.65□□□□□ -0.38
COL8A1P27658 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.65□□□□□ -0.38
COL8A1P27658 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
COL8A1P27658 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC12.65□□□□□ -0.38
COL8A1P27658 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
COL8A1P27658 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.39
COL8A1P27658 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
COL8A1P27658 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
COL8A1P27658 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
COL8A1P27658 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC12.65□□□□□ -0.39
COL8A1P27658 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
COL8A1P27658 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 AL136379.1-201ENST00000623471 2642 ntBASIC12.64□□□□□ -0.39
COL8A1P27658 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC12.64□□□□□ -0.39
COL8A1P27658 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC12.64□□□□□ -0.39
COL8A1P27658 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
COL8A1P27658 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC12.64□□□□□ -0.39
COL8A1P27658 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC12.64□□□□□ -0.39
COL8A1P27658 VENTXP4-201ENST00000449029 958 ntBASIC12.64□□□□□ -0.39
COL8A1P27658 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC12.64□□□□□ -0.39
COL8A1P27658 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 EIF2S2P5-201ENST00000457635 968 ntBASIC12.64□□□□□ -0.39
COL8A1P27658 RPL18AP8-201ENST00000486071 528 ntBASIC12.64□□□□□ -0.39
COL8A1P27658 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC12.64□□□□□ -0.39
COL8A1P27658 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC12.64□□□□□ -0.39
COL8A1P27658 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms