Protein–RNA interactions for Protein: Q96SZ6

CDK5RAP1, CDK5 regulatory subunit-associated protein 1, humanhuman

Known RBP Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP1Q96SZ6 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CDK5RAP1Q96SZ6 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CDK5RAP1Q96SZ6 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CDK5RAP1Q96SZ6 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CDK5RAP1Q96SZ6 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
CDK5RAP1Q96SZ6 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CDK5RAP1Q96SZ6 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC23.61■■□□□ 1.37
CDK5RAP1Q96SZ6 AC241377.3-202ENST00000626088 1088 ntBASIC23.61■■□□□ 1.37
CDK5RAP1Q96SZ6 AC241585.3-202ENST00000628937 1088 ntBASIC23.61■■□□□ 1.37
CDK5RAP1Q96SZ6 AC245100.8-202ENST00000629247 1058 ntBASIC23.61■■□□□ 1.37
CDK5RAP1Q96SZ6 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
CDK5RAP1Q96SZ6 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
CDK5RAP1Q96SZ6 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
CDK5RAP1Q96SZ6 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.61■■□□□ 1.37
CDK5RAP1Q96SZ6 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
CDK5RAP1Q96SZ6 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CDK5RAP1Q96SZ6 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CDK5RAP1Q96SZ6 AC096631.2-201ENST00000436136 790 ntBASIC23.6■■□□□ 1.37
CDK5RAP1Q96SZ6 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC23.6■■□□□ 1.37
CDK5RAP1Q96SZ6 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.6■■□□□ 1.37
CDK5RAP1Q96SZ6 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CDK5RAP1Q96SZ6 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
CDK5RAP1Q96SZ6 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CDK5RAP1Q96SZ6 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC23.59■■□□□ 1.37
CDK5RAP1Q96SZ6 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC23.59■■□□□ 1.37
CDK5RAP1Q96SZ6 EI24-213ENST00000618552 1747 ntTSL 5 BASIC23.59■■□□□ 1.37
CDK5RAP1Q96SZ6 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CDK5RAP1Q96SZ6 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CDK5RAP1Q96SZ6 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC23.59■■□□□ 1.37
CDK5RAP1Q96SZ6 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CDK5RAP1Q96SZ6 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CDK5RAP1Q96SZ6 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CDK5RAP1Q96SZ6 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CDK5RAP1Q96SZ6 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CDK5RAP1Q96SZ6 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CDK5RAP1Q96SZ6 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CDK5RAP1Q96SZ6 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.58■■□□□ 1.37
CDK5RAP1Q96SZ6 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CDK5RAP1Q96SZ6 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
CDK5RAP1Q96SZ6 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC23.58■■□□□ 1.37
CDK5RAP1Q96SZ6 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
CDK5RAP1Q96SZ6 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC23.58■■□□□ 1.37
CDK5RAP1Q96SZ6 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
CDK5RAP1Q96SZ6 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.58■■□□□ 1.37
CDK5RAP1Q96SZ6 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.36
CDK5RAP1Q96SZ6 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CDK5RAP1Q96SZ6 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.36
CDK5RAP1Q96SZ6 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CDK5RAP1Q96SZ6 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CDK5RAP1Q96SZ6 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC23.57■■□□□ 1.36
CDK5RAP1Q96SZ6 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CDK5RAP1Q96SZ6 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CDK5RAP1Q96SZ6 SHD-204ENST00000599689 1729 ntTSL 5 BASIC23.56■■□□□ 1.36
CDK5RAP1Q96SZ6 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CDK5RAP1Q96SZ6 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
CDK5RAP1Q96SZ6 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CDK5RAP1Q96SZ6 AC110285.6-201ENST00000617652 491 ntBASIC23.56■■□□□ 1.36
CDK5RAP1Q96SZ6 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CDK5RAP1Q96SZ6 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
CDK5RAP1Q96SZ6 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC23.56■■□□□ 1.36
CDK5RAP1Q96SZ6 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC23.55■■□□□ 1.36
CDK5RAP1Q96SZ6 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC23.55■■□□□ 1.36
CDK5RAP1Q96SZ6 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CDK5RAP1Q96SZ6 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC23.55■■□□□ 1.36
CDK5RAP1Q96SZ6 AC133561.4-201ENST00000566112 224 ntBASIC23.55■■□□□ 1.36
CDK5RAP1Q96SZ6 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.55■■□□□ 1.36
CDK5RAP1Q96SZ6 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
CDK5RAP1Q96SZ6 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CDK5RAP1Q96SZ6 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CDK5RAP1Q96SZ6 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDK5RAP1Q96SZ6 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDK5RAP1Q96SZ6 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CDK5RAP1Q96SZ6 SYT6-210ENST00000641643 1587 ntBASIC23.54■■□□□ 1.36
CDK5RAP1Q96SZ6 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CDK5RAP1Q96SZ6 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDK5RAP1Q96SZ6 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CDK5RAP1Q96SZ6 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CDK5RAP1Q96SZ6 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
CDK5RAP1Q96SZ6 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CDK5RAP1Q96SZ6 UNC93B3-201ENST00000308076 687 ntBASIC23.53■■□□□ 1.36
CDK5RAP1Q96SZ6 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CDK5RAP1Q96SZ6 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
CDK5RAP1Q96SZ6 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CDK5RAP1Q96SZ6 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.53■■□□□ 1.36
CDK5RAP1Q96SZ6 AC099791.2-201ENST00000605725 427 ntBASIC23.53■■□□□ 1.36
CDK5RAP1Q96SZ6 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.53■■□□□ 1.36
CDK5RAP1Q96SZ6 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CDK5RAP1Q96SZ6 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CDK5RAP1Q96SZ6 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
CDK5RAP1Q96SZ6 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CDK5RAP1Q96SZ6 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CDK5RAP1Q96SZ6 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CDK5RAP1Q96SZ6 AL138724.1-201ENST00000606771 1088 ntBASIC23.52■■□□□ 1.36
CDK5RAP1Q96SZ6 AC106739.1-201ENST00000617035 715 ntBASIC23.52■■□□□ 1.36
CDK5RAP1Q96SZ6 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CDK5RAP1Q96SZ6 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.52■■□□□ 1.36
CDK5RAP1Q96SZ6 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.51■■□□□ 1.35
CDK5RAP1Q96SZ6 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CDK5RAP1Q96SZ6 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CDK5RAP1Q96SZ6 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.51■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms