Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DEPDC4Q8N2C3 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DEPDC4Q8N2C3 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
DEPDC4Q8N2C3 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
DEPDC4Q8N2C3 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.95■□□□□ 0.94
DEPDC4Q8N2C3 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.95■□□□□ 0.94
DEPDC4Q8N2C3 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DEPDC4Q8N2C3 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DEPDC4Q8N2C3 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DEPDC4Q8N2C3 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
DEPDC4Q8N2C3 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
DEPDC4Q8N2C3 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
DEPDC4Q8N2C3 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
DEPDC4Q8N2C3 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
DEPDC4Q8N2C3 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
DEPDC4Q8N2C3 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
DEPDC4Q8N2C3 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
DEPDC4Q8N2C3 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.94■□□□□ 0.94
DEPDC4Q8N2C3 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
DEPDC4Q8N2C3 EP400NL-214ENST00000641289 2402 ntBASIC20.93■□□□□ 0.94
DEPDC4Q8N2C3 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
DEPDC4Q8N2C3 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
DEPDC4Q8N2C3 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.93■□□□□ 0.94
DEPDC4Q8N2C3 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
DEPDC4Q8N2C3 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
DEPDC4Q8N2C3 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
DEPDC4Q8N2C3 AC092068.2-201ENST00000590491 1708 ntBASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 DUSP8P3-201ENST00000399571 1760 ntBASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
DEPDC4Q8N2C3 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 YBX1P4-201ENST00000392794 808 ntBASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 RARRES2P1-201ENST00000474487 481 ntBASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 LINC00565-201ENST00000562710 2331 ntBASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
DEPDC4Q8N2C3 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
DEPDC4Q8N2C3 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
DEPDC4Q8N2C3 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
DEPDC4Q8N2C3 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
DEPDC4Q8N2C3 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
DEPDC4Q8N2C3 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
DEPDC4Q8N2C3 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
DEPDC4Q8N2C3 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
DEPDC4Q8N2C3 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.9■□□□□ 0.94
DEPDC4Q8N2C3 AC010980.1-201ENST00000587192 1142 ntBASIC20.9■□□□□ 0.94
DEPDC4Q8N2C3 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.9■□□□□ 0.94
DEPDC4Q8N2C3 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
DEPDC4Q8N2C3 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
DEPDC4Q8N2C3 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
DEPDC4Q8N2C3 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.89■□□□□ 0.94
DEPDC4Q8N2C3 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
DEPDC4Q8N2C3 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
DEPDC4Q8N2C3 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.89■□□□□ 0.93
DEPDC4Q8N2C3 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
DEPDC4Q8N2C3 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
DEPDC4Q8N2C3 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
DEPDC4Q8N2C3 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.89■□□□□ 0.93
DEPDC4Q8N2C3 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
DEPDC4Q8N2C3 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
DEPDC4Q8N2C3 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
DEPDC4Q8N2C3 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
DEPDC4Q8N2C3 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
DEPDC4Q8N2C3 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
DEPDC4Q8N2C3 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.88■□□□□ 0.93
DEPDC4Q8N2C3 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.88■□□□□ 0.93
DEPDC4Q8N2C3 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
DEPDC4Q8N2C3 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
DEPDC4Q8N2C3 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
DEPDC4Q8N2C3 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.87■□□□□ 0.93
DEPDC4Q8N2C3 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
DEPDC4Q8N2C3 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
DEPDC4Q8N2C3 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.87■□□□□ 0.93
DEPDC4Q8N2C3 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.87■□□□□ 0.93
DEPDC4Q8N2C3 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
DEPDC4Q8N2C3 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
DEPDC4Q8N2C3 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms