Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC28.6■■■□□ 2.17
NPHP1O15259 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
NPHP1O15259 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
NPHP1O15259 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
NPHP1O15259 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
NPHP1O15259 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC28.59■■■□□ 2.17
NPHP1O15259 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC28.59■■■□□ 2.17
NPHP1O15259 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
NPHP1O15259 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC28.59■■■□□ 2.17
NPHP1O15259 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
NPHP1O15259 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
NPHP1O15259 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
NPHP1O15259 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
NPHP1O15259 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC28.58■■■□□ 2.17
NPHP1O15259 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC28.58■■■□□ 2.17
NPHP1O15259 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC28.58■■■□□ 2.17
NPHP1O15259 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC28.58■■■□□ 2.17
NPHP1O15259 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
NPHP1O15259 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
NPHP1O15259 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC28.57■■■□□ 2.16
NPHP1O15259 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC28.57■■■□□ 2.16
NPHP1O15259 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
NPHP1O15259 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
NPHP1O15259 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC28.57■■■□□ 2.16
NPHP1O15259 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
NPHP1O15259 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC28.56■■■□□ 2.16
NPHP1O15259 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC28.56■■■□□ 2.16
NPHP1O15259 ASB1-202ENST00000409297 878 ntTSL 5 BASIC28.56■■■□□ 2.16
NPHP1O15259 AC034268.1-201ENST00000441047 882 ntBASIC28.56■■■□□ 2.16
NPHP1O15259 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
NPHP1O15259 AC135731.1-201ENST00000569415 2548 ntBASIC28.56■■■□□ 2.16
NPHP1O15259 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC28.55■■■□□ 2.16
NPHP1O15259 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
NPHP1O15259 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC28.55■■■□□ 2.16
NPHP1O15259 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
NPHP1O15259 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
NPHP1O15259 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC28.55■■■□□ 2.16
NPHP1O15259 pRNA.6-201ENST00000610482 90 ntBASIC28.55■■■□□ 2.16
NPHP1O15259 pRNA.5-201ENST00000612139 90 ntBASIC28.55■■■□□ 2.16
NPHP1O15259 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
NPHP1O15259 pRNA.11-201ENST00000618423 90 ntBASIC28.55■■■□□ 2.16
NPHP1O15259 pRNA.13-201ENST00000619112 90 ntBASIC28.55■■■□□ 2.16
NPHP1O15259 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC28.55■■■□□ 2.16
NPHP1O15259 LSR-205ENST00000427250 1606 ntTSL 2 BASIC28.54■■■□□ 2.16
NPHP1O15259 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC28.54■■■□□ 2.16
NPHP1O15259 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC28.54■■■□□ 2.16
NPHP1O15259 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
NPHP1O15259 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC28.54■■■□□ 2.16
NPHP1O15259 NME4-202ENST00000382940 766 ntTSL 3 BASIC28.54■■■□□ 2.16
NPHP1O15259 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
NPHP1O15259 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC28.54■■■□□ 2.16
NPHP1O15259 NME4-211ENST00000620944 1193 ntTSL 2 BASIC28.54■■■□□ 2.16
NPHP1O15259 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
NPHP1O15259 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
NPHP1O15259 VGF-203ENST00000611537 1622 ntTSL 5 BASIC28.54■■■□□ 2.16
NPHP1O15259 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.16
NPHP1O15259 AL121749.1-202ENST00000609313 2153 ntBASIC28.53■■■□□ 2.16
NPHP1O15259 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC28.53■■■□□ 2.16
NPHP1O15259 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
NPHP1O15259 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
NPHP1O15259 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC28.53■■■□□ 2.16
NPHP1O15259 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
NPHP1O15259 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC28.53■■■□□ 2.16
NPHP1O15259 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC28.53■■■□□ 2.16
NPHP1O15259 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
NPHP1O15259 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC28.53■■■□□ 2.16
NPHP1O15259 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC28.52■■■□□ 2.16
NPHP1O15259 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC28.52■■■□□ 2.16
NPHP1O15259 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC28.52■■■□□ 2.16
NPHP1O15259 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC28.52■■■□□ 2.16
NPHP1O15259 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC28.52■■■□□ 2.16
NPHP1O15259 USF2-207ENST00000595068 1612 ntTSL 5 BASIC28.51■■■□□ 2.15
NPHP1O15259 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC28.51■■■□□ 2.15
NPHP1O15259 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC28.51■■■□□ 2.15
NPHP1O15259 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC28.51■■■□□ 2.15
NPHP1O15259 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
NPHP1O15259 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC28.51■■■□□ 2.15
NPHP1O15259 TSPY26P-201ENST00000476365 1326 ntBASIC28.5■■■□□ 2.15
NPHP1O15259 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
NPHP1O15259 AL137784.2-201ENST00000607332 1000 ntBASIC28.5■■■□□ 2.15
NPHP1O15259 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
NPHP1O15259 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
NPHP1O15259 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC28.5■■■□□ 2.15
NPHP1O15259 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC28.49■■■□□ 2.15
NPHP1O15259 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
NPHP1O15259 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
NPHP1O15259 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
NPHP1O15259 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC28.49■■■□□ 2.15
NPHP1O15259 AC090192.1-201ENST00000517740 490 ntBASIC28.49■■■□□ 2.15
NPHP1O15259 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
NPHP1O15259 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
NPHP1O15259 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
NPHP1O15259 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC28.49■■■□□ 2.15
NPHP1O15259 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
NPHP1O15259 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
NPHP1O15259 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
NPHP1O15259 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC28.48■■■□□ 2.15
NPHP1O15259 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC28.48■■■□□ 2.15
NPHP1O15259 IKBKGP1-201ENST00000612193 1073 ntBASIC28.48■■■□□ 2.15
NPHP1O15259 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms