Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC004898.1-201ENST00000451057 766 ntBASIC13□□□□□ -0.33
H3F3AP84243 AC108725.1-201ENST00000495472 409 ntBASIC13□□□□□ -0.33
H3F3AP84243 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13□□□□□ -0.33
H3F3AP84243 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC13□□□□□ -0.33
H3F3AP84243 RN7SL163P-201ENST00000583100 276 ntBASIC13□□□□□ -0.33
H3F3AP84243 AC068587.8-201ENST00000641239 219 ntBASIC13□□□□□ -0.33
H3F3AP84243 AC004923.1-202ENST00000642106 209 ntBASIC13□□□□□ -0.33
H3F3AP84243 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13□□□□□ -0.33
H3F3AP84243 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
H3F3AP84243 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13□□□□□ -0.33
H3F3AP84243 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
H3F3AP84243 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
H3F3AP84243 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 AC136759.1-202ENST00000530858 2194 ntBASIC13□□□□□ -0.33
H3F3AP84243 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
H3F3AP84243 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
H3F3AP84243 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
H3F3AP84243 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13□□□□□ -0.33
H3F3AP84243 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
H3F3AP84243 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC12.99□□□□□ -0.33
H3F3AP84243 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC12.99□□□□□ -0.33
H3F3AP84243 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
H3F3AP84243 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
H3F3AP84243 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC12.99□□□□□ -0.33
H3F3AP84243 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC12.99□□□□□ -0.33
H3F3AP84243 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC12.99□□□□□ -0.33
H3F3AP84243 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC12.99□□□□□ -0.33
H3F3AP84243 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC12.99□□□□□ -0.33
H3F3AP84243 AC104306.2-201ENST00000451877 341 ntBASIC12.99□□□□□ -0.33
H3F3AP84243 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC12.99□□□□□ -0.33
H3F3AP84243 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC12.99□□□□□ -0.33
H3F3AP84243 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC12.99□□□□□ -0.33
H3F3AP84243 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 AC133540.1-201ENST00000620845 1019 ntBASIC12.99□□□□□ -0.33
H3F3AP84243 ABBA01031663.1-201ENST00000635630 790 ntBASIC12.99□□□□□ -0.33
H3F3AP84243 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC12.99□□□□□ -0.33
H3F3AP84243 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
H3F3AP84243 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
H3F3AP84243 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC12.99□□□□□ -0.33
H3F3AP84243 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC12.99□□□□□ -0.33
H3F3AP84243 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC12.99□□□□□ -0.33
H3F3AP84243 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
H3F3AP84243 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
H3F3AP84243 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
H3F3AP84243 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
H3F3AP84243 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC12.98□□□□□ -0.33
H3F3AP84243 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC12.98□□□□□ -0.33
H3F3AP84243 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
H3F3AP84243 HSPA8P5-201ENST00000456928 2069 ntBASIC12.98□□□□□ -0.33
H3F3AP84243 SRC-202ENST00000373558 4304 ntTSL 5 BASIC12.98□□□□□ -0.33
H3F3AP84243 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
H3F3AP84243 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
H3F3AP84243 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC12.98□□□□□ -0.33
H3F3AP84243 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
H3F3AP84243 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC12.98□□□□□ -0.33
H3F3AP84243 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
H3F3AP84243 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
H3F3AP84243 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
H3F3AP84243 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
H3F3AP84243 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC12.98□□□□□ -0.33
H3F3AP84243 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC12.98□□□□□ -0.33
H3F3AP84243 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
H3F3AP84243 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
H3F3AP84243 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms