Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC005695.3-201ENST00000614522 232 ntBASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 AC244394.1-201ENST00000435000 1665 ntBASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NUP54Q7Z3B4 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 FAM86MP-201ENST00000340703 885 ntBASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 AL157407.1-201ENST00000435784 904 ntBASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 AC104306.2-201ENST00000451877 341 ntBASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 MIR6799-201ENST00000620297 69 ntBASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 ABBA01031663.1-201ENST00000635630 790 ntBASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.49□□□□□ -0.25
NUP54Q7Z3B4 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 KRT8P28-201ENST00000433288 1390 ntBASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 AL008718.2-201ENST00000609206 1313 ntBASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 AC108725.1-201ENST00000495472 409 ntBASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms