Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 SMIM21-202ENST00000579022 1834 ntAPPRIS P3 TSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 MALAT1-202ENST00000534336 8708 ntBASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 NR1D1-201ENST00000246672 2772 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 CYB5R4-202ENST00000369681 9252 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 DNAH9-201ENST00000262442 13750 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 MPP2-201ENST00000269095 4414 ntTSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 ASTN1-203ENST00000367657 4187 ntTSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 ATP8B1-201ENST00000283684 5818 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 PRKCQ-203ENST00000539722 3224 ntTSL 2 BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 CHRNA7-223ENST00000637033 3204 ntTSL 5 BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 SLC8A3-207ENST00000528359 2840 ntTSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 SLC8A3-210ENST00000534137 2837 ntTSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 AC060814.4-201ENST00000594169 2163 ntBASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 XRCC3-202ENST00000553264 3018 ntAPPRIS P1 TSL 2 BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 SHPRH-206ENST00000438092 6994 ntTSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 N6AMT1-201ENST00000303775 4865 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 GRIK5-202ENST00000301218 3310 ntTSL 1 (best) BASIC8□□□□□ -1.13
CHKB-CPT1BH3BT56 IFT80-201ENST00000326448 4306 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 PLOD2-209ENST00000494950 2908 ntTSL 2 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 NCAM1-229ENST00000621518 4922 ntTSL 5 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 LAMB3-201ENST00000356082 4055 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 C1RL-201ENST00000266542 3394 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 ACBD5-203ENST00000375901 3685 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 RSU1-201ENST00000345264 3834 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 RPS24-204ENST00000440692 2814 ntTSL 3 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 Z98257.2-202ENST00000641138 1548 ntBASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 C9orf3-203ENST00000375315 3136 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 CENPC-201ENST00000273853 6940 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 FER1L4-208ENST00000611673 3860 ntTSL 2 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 SLC25A35-203ENST00000579192 2136 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 ZNF154-202ENST00000512439 5687 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 CD99L2-203ENST00000370377 3604 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 LINC00664-203ENST00000599078 3760 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 EAF1-201ENST00000396842 4690 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 DNMT3B-201ENST00000201963 4255 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 PLOD3-201ENST00000223127 2920 ntAPPRIS P2 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 TMEM200A-201ENST00000296978 3512 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 C1orf116-201ENST00000359470 5493 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 VMO1-203ENST00000416307 712 ntTSL 2 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 PSG8-AS1-201ENST00000425668 1873 ntTSL 2 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 MLF1-209ENST00000482628 1050 ntTSL 5 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 ARHGEF4-212ENST00000525839 3828 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 P4HB-223ENST00000576390 439 ntTSL 4 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 AP001412.1-201ENST00000608405 714 ntBASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 AC111170.3-201ENST00000624282 2464 ntBASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 TF-201ENST00000402696 2968 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 KCNJ3-203ENST00000544049 4523 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 ITGA7-213ENST00000555728 3930 ntAPPRIS ALT2 TSL 5 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 NDRG4-204ENST00000394282 3626 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 KRT18P22-201ENST00000402024 1347 ntBASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 EPB41L1-205ENST00000373946 6327 ntAPPRIS ALT1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 SLC5A6-201ENST00000310574 3231 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHKB-CPT1BH3BT56 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC7.99□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms