Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC15.14■□□□□ 0.01
EPHB3P54753 AC087392.5-201ENST00000612517 489 ntBASIC15.14■□□□□ 0.01
EPHB3P54753 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
EPHB3P54753 AC009560.1-201ENST00000620208 434 ntBASIC15.14■□□□□ 0.01
EPHB3P54753 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
EPHB3P54753 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC15.14■□□□□ 0.01
EPHB3P54753 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
EPHB3P54753 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.14■□□□□ 0.01
EPHB3P54753 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
EPHB3P54753 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
EPHB3P54753 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
EPHB3P54753 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
EPHB3P54753 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC15.14■□□□□ 0.01
EPHB3P54753 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
EPHB3P54753 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
EPHB3P54753 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC15.14■□□□□ 0.01
EPHB3P54753 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
EPHB3P54753 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
EPHB3P54753 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
EPHB3P54753 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
EPHB3P54753 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
EPHB3P54753 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
EPHB3P54753 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.13■□□□□ 0.01
EPHB3P54753 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
EPHB3P54753 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC15.13■□□□□ 0.01
EPHB3P54753 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 RPL17P11-201ENST00000417593 544 ntBASIC15.13■□□□□ 0.01
EPHB3P54753 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.13■□□□□ 0.01
EPHB3P54753 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC15.13■□□□□ 0.01
EPHB3P54753 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC15.13■□□□□ 0.01
EPHB3P54753 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC15.13■□□□□ 0.01
EPHB3P54753 AC104784.1-201ENST00000473096 294 ntBASIC15.13■□□□□ 0.01
EPHB3P54753 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
EPHB3P54753 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC15.13■□□□□ 0.01
EPHB3P54753 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC15.13■□□□□ 0.01
EPHB3P54753 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.13■□□□□ 0.01
EPHB3P54753 MIR4522-201ENST00000584932 87 ntBASIC15.13■□□□□ 0.01
EPHB3P54753 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC15.13■□□□□ 0.01
EPHB3P54753 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
EPHB3P54753 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC15.13■□□□□ 0.01
EPHB3P54753 AC092978.1-202ENST00000637590 1327 ntBASIC15.13■□□□□ 0.01
EPHB3P54753 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.13■□□□□ 0.01
EPHB3P54753 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
EPHB3P54753 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
EPHB3P54753 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.12■□□□□ 0.01
EPHB3P54753 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.12■□□□□ 0.01
EPHB3P54753 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
EPHB3P54753 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC15.12■□□□□ 0.01
EPHB3P54753 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
EPHB3P54753 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 AC073869.2-201ENST00000417338 1026 ntBASIC15.12■□□□□ 0.01
EPHB3P54753 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC15.12■□□□□ 0.01
EPHB3P54753 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 AL161932.2-201ENST00000435436 679 ntBASIC15.12■□□□□ 0.01
EPHB3P54753 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC15.12■□□□□ 0.01
EPHB3P54753 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 RN7SL81P-201ENST00000493781 261 ntBASIC15.12■□□□□ 0.01
EPHB3P54753 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
EPHB3P54753 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC15.12■□□□□ 0.01
EPHB3P54753 NPM1P43-201ENST00000558669 786 ntBASIC15.12■□□□□ 0.01
EPHB3P54753 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 AC135983.4-201ENST00000564116 1262 ntBASIC15.12■□□□□ 0.01
EPHB3P54753 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
EPHB3P54753 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC15.12■□□□□ 0.01
EPHB3P54753 SKA2-205ENST00000580541 689 ntTSL 3 BASIC15.12■□□□□ 0.01
EPHB3P54753 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC15.12■□□□□ 0.01
EPHB3P54753 AC007881.3-201ENST00000608897 607 ntBASIC15.12■□□□□ 0.01
EPHB3P54753 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
EPHB3P54753 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms