Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
HNF4AP41235 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
HNF4AP41235 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
HNF4AP41235 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.21□□□□□ -0.14
HNF4AP41235 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
HNF4AP41235 AC006504.5-208ENST00000588784 2401 ntBASIC14.21□□□□□ -0.14
HNF4AP41235 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HNF4AP41235 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HNF4AP41235 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
HNF4AP41235 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
HNF4AP41235 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.21□□□□□ -0.14
HNF4AP41235 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
HNF4AP41235 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HNF4AP41235 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.21□□□□□ -0.14
HNF4AP41235 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.21□□□□□ -0.14
HNF4AP41235 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HNF4AP41235 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
HNF4AP41235 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.2□□□□□ -0.14
HNF4AP41235 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 AL136309.1-201ENST00000403917 691 ntBASIC14.2□□□□□ -0.14
HNF4AP41235 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.2□□□□□ -0.14
HNF4AP41235 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.2□□□□□ -0.14
HNF4AP41235 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.2□□□□□ -0.14
HNF4AP41235 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.2□□□□□ -0.14
HNF4AP41235 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
HNF4AP41235 SORD2P-201ENST00000558556 1069 ntBASIC14.2□□□□□ -0.14
HNF4AP41235 HNRNPA1P48-202ENST00000565308 961 ntBASIC14.2□□□□□ -0.14
HNF4AP41235 MIR4259-201ENST00000584466 101 ntBASIC14.2□□□□□ -0.14
HNF4AP41235 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.2□□□□□ -0.14
HNF4AP41235 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC14.2□□□□□ -0.14
HNF4AP41235 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.2□□□□□ -0.14
HNF4AP41235 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC14.2□□□□□ -0.14
HNF4AP41235 AC133552.6-201ENST00000613406 534 ntBASIC14.2□□□□□ -0.14
HNF4AP41235 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.2□□□□□ -0.14
HNF4AP41235 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.2□□□□□ -0.14
HNF4AP41235 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.2□□□□□ -0.14
HNF4AP41235 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.2□□□□□ -0.14
HNF4AP41235 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.2□□□□□ -0.14
HNF4AP41235 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC14.2□□□□□ -0.14
HNF4AP41235 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.2□□□□□ -0.14
HNF4AP41235 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.2□□□□□ -0.14
HNF4AP41235 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
HNF4AP41235 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HNF4AP41235 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.2□□□□□ -0.14
HNF4AP41235 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HNF4AP41235 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HNF4AP41235 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
HNF4AP41235 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HNF4AP41235 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.19□□□□□ -0.14
HNF4AP41235 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HNF4AP41235 BEND3P1-201ENST00000421591 1944 ntBASIC14.19□□□□□ -0.14
HNF4AP41235 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.19□□□□□ -0.14
HNF4AP41235 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.19□□□□□ -0.14
HNF4AP41235 AC020910.6-201ENST00000623084 1459 ntBASIC14.19□□□□□ -0.14
HNF4AP41235 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HNF4AP41235 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
HNF4AP41235 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HNF4AP41235 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HNF4AP41235 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.19□□□□□ -0.14
HNF4AP41235 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
HNF4AP41235 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.19□□□□□ -0.14
HNF4AP41235 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.19□□□□□ -0.14
HNF4AP41235 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.19□□□□□ -0.14
HNF4AP41235 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HNF4AP41235 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HNF4AP41235 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
HNF4AP41235 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HNF4AP41235 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HNF4AP41235 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.19□□□□□ -0.14
HNF4AP41235 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HNF4AP41235 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HNF4AP41235 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.19□□□□□ -0.14
HNF4AP41235 HLA-V-201ENST00000429037 534 ntBASIC14.19□□□□□ -0.14
HNF4AP41235 ATP5G2P4-201ENST00000442175 420 ntBASIC14.19□□□□□ -0.14
HNF4AP41235 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.19□□□□□ -0.14
HNF4AP41235 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms