RNA–Protein interactions for RNA: ENST00000472815.5

HIF3A-206, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2 BASIC

Gene HIF3A, Length 1,709 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-206ENST00000472815 NISCHQ9Y2I1 1504 aa33.14■■■□□ 2.9
HIF3A-206ENST00000472815 CCDC180Q9P1Z9 1646 aa29.04■■■□□ 2.24
HIF3A-206ENST00000472815 ABCC9O60706 1549 aa27.86■■■□□ 2.05
HIF3A-206ENST00000472815 ZCCHC6Q5VYS8 1495 aaKnown RBP27.83■■■□□ 2.05
HIF3A-206ENST00000472815 DCAF1Q9Y4B6 1507 aa27.48■■□□□ 1.99
HIF3A-206ENST00000472815 DCAF8L2P0C7V8 631 aa27.33■■□□□ 1.97
HIF3A-206ENST00000472815 MYO15BQ96JP2 1530 aa27.2■■□□□ 1.94
HIF3A-206ENST00000472815 NACADO15069 1562 aa27.14■■□□□ 1.94
HIF3A-206ENST00000472815 RB1CC1Q8TDY2 1594 aa27.07■■□□□ 1.92
HIF3A-206ENST00000472815 SHROOM4Q9ULL8 1493 aa26.87■■□□□ 1.89
HIF3A-206ENST00000472815 SCRIBQ14160 1630 aa26.57■■□□□ 1.84
HIF3A-206ENST00000472815 UNC13AQ9UPW8 1703 aa26.53■■□□□ 1.84
HIF3A-206ENST00000472815 BICRAQ9NZM4 1560 aa26.2■■□□□ 1.78
HIF3A-206ENST00000472815 PABPN1Q86U42 306 aaKnown RBP eCLIP26.07■■□□□ 1.76
HIF3A-206ENST00000472815 SUPT5HO00267 1087 aaKnown RBP25.87■■□□□ 1.73
HIF3A-206ENST00000472815 BAZ1AQ9NRL2 1556 aaPredicted RBP25.66■■□□□ 1.7
HIF3A-206ENST00000472815 CECR2Q9BXF3 1484 aa25.65■■□□□ 1.7
HIF3A-206ENST00000472815 RSF1Q96T23 1441 aaPredicted RBP25.64■■□□□ 1.7
HIF3A-206ENST00000472815 MROH2BQ7Z745 1585 aa25.54■■□□□ 1.68
HIF3A-206ENST00000472815 SMARCA4P51532 1647 aa25.51■■□□□ 1.67
HIF3A-206ENST00000472815 EIF4G1Q04637 1599 aaKnown RBP25.48■■□□□ 1.67
HIF3A-206ENST00000472815 WIZO95785 1651 aa25.35■■□□□ 1.65
HIF3A-206ENST00000472815 CC2D2AQ9P2K1 1620 aa25.27■■□□□ 1.64
HIF3A-206ENST00000472815 PEG3Q9GZU2 1588 aa25.23■■□□□ 1.63
HIF3A-206ENST00000472815 SMARCA2P51531 1590 aa25.15■■□□□ 1.62
HIF3A-206ENST00000472815 TOP2AP11388 1531 aaKnown RBP25.15■■□□□ 1.62
HIF3A-206ENST00000472815 DNAJC5BQ9UF47 199 aa25.11■■□□□ 1.61
HIF3A-206ENST00000472815 ATAD2BQ9ULI0 1458 aa25.07■■□□□ 1.6
HIF3A-206ENST00000472815 NCAPD3P42695 1498 aa24.99■■□□□ 1.59
HIF3A-206ENST00000472815 BAZ1BQ9UIG0 1483 aaKnown RBP24.98■■□□□ 1.59
HIF3A-206ENST00000472815 HMGXB3Q12766 1538 aa24.95■■□□□ 1.59
HIF3A-206ENST00000472815 CCDC88BA6NC98 1476 aa24.83■■□□□ 1.57
HIF3A-206ENST00000472815 CHIC1Q5VXU3 224 aa24.73■■□□□ 1.55
HIF3A-206ENST00000472815 TRIM41Q8WV44 630 aa24.41■■□□□ 1.5
HIF3A-206ENST00000472815 CFTRP13569 1480 aa24.32■■□□□ 1.48
HIF3A-206ENST00000472815 LAMC3Q9Y6N6 1575 aa24.32■■□□□ 1.48
HIF3A-206ENST00000472815 PRDM2Q13029 1718 aa24.31■■□□□ 1.48
HIF3A-206ENST00000472815 CADPSQ9ULU8 1353 aa24.28■■□□□ 1.48
HIF3A-206ENST00000472815 ABCC8Q09428 1581 aa24.27■■□□□ 1.48
HIF3A-206ENST00000472815 NESP48681 1621 aa24.24■■□□□ 1.47
HIF3A-206ENST00000472815 WRNQ14191 1432 aaPredicted RBP eCLIP24.2■■□□□ 1.46
HIF3A-206ENST00000472815 PDS5BQ9NTI5 1447 aa24.11■■□□□ 1.45
HIF3A-206ENST00000472815 KIF21AQ7Z4S6 1674 aa24.06■■□□□ 1.44
HIF3A-206ENST00000472815 SYNJ1O43426 1573 aa24.05■■□□□ 1.44
HIF3A-206ENST00000472815 TOP2BQ02880 1626 aa24.03■■□□□ 1.44
HIF3A-206ENST00000472815 FANCD2Q9BXW9 1451 aa24.02■■□□□ 1.44
HIF3A-206ENST00000472815 BIVM-ERCC5R4GMW8 1640 aa24.02■■□□□ 1.43
HIF3A-206ENST00000472815 ERCC6Q03468 1493 aa24.01■■□□□ 1.43
HIF3A-206ENST00000472815 CEP164Q9UPV0 1460 aa23.96■■□□□ 1.43
HIF3A-206ENST00000472815 EEA1Q15075 1411 aa23.91■■□□□ 1.42
HIF3A-206ENST00000472815 CUX1P39880 1505 aa23.9■■□□□ 1.42
HIF3A-206ENST00000472815 FAM9AQ8IZU1 332 aaPredicted RBP23.85■■□□□ 1.41
HIF3A-206ENST00000472815 THOC2Q8NI27 1593 aaKnown RBP23.83■■□□□ 1.41
HIF3A-206ENST00000472815 MRC2Q9UBG0 1479 aa23.82■■□□□ 1.4
HIF3A-206ENST00000472815 DNMBPQ6XZF7 1577 aa23.79■■□□□ 1.4
HIF3A-206ENST00000472815 SOGA1O94964 1423 aa23.78■■□□□ 1.4
HIF3A-206ENST00000472815 WDR62O43379 1518 aa23.74■■□□□ 1.39
HIF3A-206ENST00000472815 URB2Q14146 1524 aaKnown RBP23.74■■□□□ 1.39
HIF3A-206ENST00000472815 LOC105371045A0A1W2PR82 267 aa23.71■■□□□ 1.39
HIF3A-206ENST00000472815 TOPBP1Q92547 1522 aa23.7■■□□□ 1.38
HIF3A-206ENST00000472815 FGD5Q6ZNL6 1462 aa23.68■■□□□ 1.38
HIF3A-206ENST00000472815 CSRNP3Q8WYN3 585 aa23.67■■□□□ 1.38
HIF3A-206ENST00000472815 RUSC2Q8N2Y8 1516 aa23.65■■□□□ 1.38
HIF3A-206ENST00000472815 KIF27Q86VH2 1401 aa23.62■■□□□ 1.37
HIF3A-206ENST00000472815 CUX2O14529 1486 aa23.61■■□□□ 1.37
HIF3A-206ENST00000472815 POLA1P09884 1462 aaPredicted RBP23.58■■□□□ 1.36
HIF3A-206ENST00000472815 KIF21BO75037 1637 aa23.56■■□□□ 1.36
HIF3A-206ENST00000472815 GOLGA3Q08378 1498 aa23.52■■□□□ 1.36
HIF3A-206ENST00000472815 ABCA10Q8WWZ4 1543 aa23.5■■□□□ 1.35
HIF3A-206ENST00000472815 EHMT2Q96KQ7 1210 aa23.47■■□□□ 1.35
HIF3A-206ENST00000472815 RAD54L2Q9Y4B4 1467 aa23.44■■□□□ 1.34
HIF3A-206ENST00000472815 WDR97A6NE52 1622 aa23.44■■□□□ 1.34
HIF3A-206ENST00000472815 IFT140Q96RY7 1462 aa23.43■■□□□ 1.34
HIF3A-206ENST00000472815 ERICH3Q5RHP9 1530 aa23.43■■□□□ 1.34
HIF3A-206ENST00000472815 TARBP1Q13395 1621 aaKnown RBP23.42■■□□□ 1.34
HIF3A-206ENST00000472815 TNIKQ9UKE5 1360 aa23.41■■□□□ 1.34
HIF3A-206ENST00000472815 UBTFP17480 764 aaKnown RBP23.39■■□□□ 1.33
HIF3A-206ENST00000472815 PRXQ9BXM0 1461 aa23.38■■□□□ 1.33
HIF3A-206ENST00000472815 RAPGEF2Q9Y4G8 1499 aa23.33■■□□□ 1.33
HIF3A-206ENST00000472815 IGF1RP08069 1367 aa23.32■■□□□ 1.32
HIF3A-206ENST00000472815 ABCA5Q8WWZ7 1642 aa23.31■■□□□ 1.32
HIF3A-206ENST00000472815 CUL7Q14999 1698 aa23.3■■□□□ 1.32
HIF3A-206ENST00000472815 GAPVD1Q14C86 1478 aa23.27■■□□□ 1.32
HIF3A-206ENST00000472815 CEP162Q5TB80 1403 aa23.26■■□□□ 1.31
HIF3A-206ENST00000472815 CARMIL1Q5VZK9 1371 aa23.25■■□□□ 1.31
HIF3A-206ENST00000472815 ZNF608Q9ULD9 1512 aaPredicted RBP23.25■■□□□ 1.31
HIF3A-206ENST00000472815 EIF4G3O43432 1585 aaKnown RBP23.24■■□□□ 1.31
HIF3A-206ENST00000472815 TDRD9Q8NDG6 1382 aaKnown RBP23.22■■□□□ 1.31
HIF3A-206ENST00000472815 PBRM1Q86U86 1689 aa23.18■■□□□ 1.3
HIF3A-206ENST00000472815 AQRO60306 1485 aaKnown RBP eCLIP23.18■■□□□ 1.3
HIF3A-206ENST00000472815 GRIN2BQ13224 1484 aa23.12■■□□□ 1.29
HIF3A-206ENST00000472815 CLIP1P30622 1438 aa23.11■■□□□ 1.29
HIF3A-206ENST00000472815 FHAD1B1AJZ9 1412 aa23.03■■□□□ 1.28
HIF3A-206ENST00000472815 ADAMTS12P58397 1594 aa23.02■■□□□ 1.28
HIF3A-206ENST00000472815 CTTNBP2Q8WZ74 1663 aa23.02■■□□□ 1.28
HIF3A-206ENST00000472815 MAGI1Q96QZ7 1491 aaPredicted RBP23.01■■□□□ 1.27
HIF3A-206ENST00000472815 SNAPC4Q5SXM2 1469 aa22.99■■□□□ 1.27
HIF3A-206ENST00000472815 RANGAP1P46060 587 aaPredicted RBP22.92■■□□□ 1.26
HIF3A-206ENST00000472815 CHD1O14646 1710 aa22.91■■□□□ 1.26
HIF3A-206ENST00000472815 VPS8Q8N3P4 1428 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms