Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ADH5-207ENST00000508146 722 ntTSL 416.25■□□□□ 0.192e-10■□□□□ 8.8
YBX3P16989 ADH5-211ENST00000512659 822 ntTSL 513.9□□□□□ -0.182e-10■□□□□ 8.8
YBX3P16989 ADH5-212ENST00000512991 880 ntTSL 513.38□□□□□ -0.272e-10■□□□□ 8.8
YBX3P16989 ADH5-208ENST00000508511 1909 ntTSL 212.45□□□□□ -0.422e-10■□□□□ 8.8
YBX3P16989 ADH5-204ENST00000503130 786 ntTSL 312.19□□□□□ -0.462e-10■□□□□ 8.8
YBX3P16989 ADH5-203ENST00000502590 697 ntTSL 511.39□□□□□ -0.592e-10■□□□□ 8.8
YBX3P16989 ADH5-205ENST00000505652 623 ntTSL 59.66□□□□□ -0.862e-10■□□□□ 8.8
YBX3P16989 ADH5-206ENST00000507102 570 ntTSL 27.45□□□□□ -1.222e-10■□□□□ 8.8
YBX3P16989 ADH5-202ENST00000502386 545 ntTSL 56.93□□□□□ -1.32e-10■□□□□ 8.8
YBX3P16989 EEF1G-202ENST00000524420 557 ntTSL 413.55□□□□□ -0.245e-73■□□□□ 8.8
YBX3P16989 TRIM65-202ENST00000540128 886 ntTSL 328.16■■■□□ 2.12e-8■□□□□ 8.8
YBX3P16989 SBDS-204ENST00000490953 841 ntTSL 1 (best)24.41■■□□□ 1.52e-8■□□□□ 8.8
YBX3P16989 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.072e-8■□□□□ 8.8
YBX3P16989 TRIM65-204ENST00000543309 865 ntTSL 219.97■□□□□ 0.792e-8■□□□□ 8.8
YBX3P16989 YIPF6-202ENST00000374643 734 ntTSL 317.23■□□□□ 0.352e-8■□□□□ 8.8
YBX3P16989 TRIM65-205ENST00000591668 644 ntTSL 216.04■□□□□ 0.162e-8■□□□□ 8.8
YBX3P16989 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.012e-8■□□□□ 8.8
YBX3P16989 TRIM65-206ENST00000592642 396 ntTSL 312.08□□□□□ -0.482e-8■□□□□ 8.8
YBX3P16989 SBDS-203ENST00000463579 513 ntTSL 56.29□□□□□ -1.42e-8■□□□□ 8.8
YBX3P16989 KDM5C-214ENST00000497100 1403 ntTSL 522.85■■□□□ 1.254e-8■□□□□ 8.8
YBX3P16989 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.74e-8■□□□□ 8.8
YBX3P16989 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.274e-8■□□□□ 8.8
YBX3P16989 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.254e-8■□□□□ 8.8
YBX3P16989 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.064e-8■□□□□ 8.8
YBX3P16989 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.24e-8■□□□□ 8.8
YBX3P16989 C19orf54-205ENST00000596809 1104 ntTSL 528.78■■■□□ 2.28e-7■□□□□ 8.8
YBX3P16989 C19orf54-207ENST00000597507 947 ntTSL 223.4■■□□□ 1.348e-7■□□□□ 8.8
YBX3P16989 C19orf54-208ENST00000598352 546 ntTSL 1 (best)16.33■□□□□ 0.28e-7■□□□□ 8.8
YBX3P16989 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 04e-8■□□□□ 8.8
YBX3P16989 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.154e-8■□□□□ 8.8
YBX3P16989 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.154e-8■□□□□ 8.8
YBX3P16989 IDI1-205ENST00000491735 1066 ntTSL 1 (best)24.84■■□□□ 1.573e-7■□□□□ 8.8
YBX3P16989 ATP5B-211ENST00000553007 814 ntTSL 524.61■■□□□ 1.531e-45■□□□□ 8.8
YBX3P16989 ATP5B-209ENST00000551570 399 ntTSL 310.36□□□□□ -0.751e-45■□□□□ 8.8
YBX3P16989 PITX1-204ENST00000504936 770 ntTSL 224.49■■□□□ 1.513e-11■□□□□ 8.8
YBX3P16989 NME4-208ENST00000454619 719 ntTSL 520■□□□□ 0.792e-18■□□□□ 8.8
YBX3P16989 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC26.68■■□□□ 1.862e-13■□□□□ 8.8
YBX3P16989 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC18.84■□□□□ 0.612e-13■□□□□ 8.8
YBX3P16989 SRRM2-221ENST00000574866 638 ntTSL 323.43■■□□□ 1.345e-27■□□□□ 8.8
YBX3P16989 SRRM2-217ENST00000573692 459 ntTSL 321.41■■□□□ 1.025e-27■□□□□ 8.8
YBX3P16989 SRRM2-218ENST00000574331 1759 ntTSL 220.5■□□□□ 0.875e-27■□□□□ 8.8
YBX3P16989 IRAK1-206ENST00000437278 862 ntTSL 518.81■□□□□ 0.66e-13■□□□□ 8.8
YBX3P16989 PI4KA-218ENST00000494113 515 ntTSL 218.42■□□□□ 0.544e-14■□□□□ 8.8
YBX3P16989 SRRM2-202ENST00000570539 431 ntTSL 214□□□□□ -0.175e-27■□□□□ 8.8
YBX3P16989 NUDC-202ENST00000435827 821 ntTSL 530.01■■■□□ 2.399e-9■□□□□ 8.8
YBX3P16989 NUDC-203ENST00000452707 816 ntTSL 329.85■■■□□ 2.379e-9■□□□□ 8.8
YBX3P16989 YBX1-203ENST00000436427 1524 ntTSL 1 (best)25.71■■□□□ 1.712e-22■□□□□ 8.8
YBX3P16989 NASP-202ENST00000351223 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.252e-9■□□□□ 8.8
YBX3P16989 NASP-221ENST00000531612 938 ntAPPRIS ALT2 TSL 59.82□□□□□ -0.842e-9■□□□□ 8.8
YBX3P16989 NASP-201ENST00000350030 3207 ntAPPRIS P4 TSL 1 (best) BASIC9.41□□□□□ -0.92e-9■□□□□ 8.8
YBX3P16989 NASP-224ENST00000537798 3097 ntAPPRIS ALT2 TSL 2 BASIC8.91□□□□□ -0.982e-9■□□□□ 8.8
YBX3P16989 NASP-203ENST00000372052 1458 ntAPPRIS ALT2 TSL 5 BASIC8.49□□□□□ -1.052e-9■□□□□ 8.8
YBX3P16989 NASP-218ENST00000530073 2740 ntTSL 28.45□□□□□ -1.062e-9■□□□□ 8.8
YBX3P16989 NASP-223ENST00000534450 632 ntTSL 28.44□□□□□ -1.062e-9■□□□□ 8.8
YBX3P16989 NASP-210ENST00000481782 3659 ntTSL 27.29□□□□□ -1.242e-9■□□□□ 8.8
YBX3P16989 REPIN1-205ENST00000467980 899 ntTSL 334.08■■■■□ 3.052e-12■□□□□ 8.8
YBX3P16989 REPIN1-219ENST00000522266 480 ntTSL 229.71■■■□□ 2.352e-12■□□□□ 8.8
YBX3P16989 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC26.13■■□□□ 1.772e-12■□□□□ 8.8
YBX3P16989 REPIN1-216ENST00000518462 621 ntTSL 423.02■■□□□ 1.282e-12■□□□□ 8.8
YBX3P16989 REPIN1-211ENST00000486714 824 ntTSL 518.89■□□□□ 0.612e-12■□□□□ 8.8
YBX3P16989 PLEKHA3-203ENST00000453653 749 ntTSL 328.92■■■□□ 2.222e-8■□□□□ 8.8
YBX3P16989 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC24.11■■□□□ 1.452e-8■□□□□ 8.8
YBX3P16989 RNF168-202ENST00000437070 2202 ntTSL 218.14■□□□□ 0.492e-8■□□□□ 8.8
YBX3P16989 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.362e-8■□□□□ 8.8
YBX3P16989 MCM4-202ENST00000517709 842 ntTSL 215.86■□□□□ 0.132e-8■□□□□ 8.8
YBX3P16989 MCM4-205ENST00000518680 862 ntTSL 515.64■□□□□ 0.092e-8■□□□□ 8.8
YBX3P16989 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.052e-8■□□□□ 8.8
YBX3P16989 ADAM10-203ENST00000402627 861 ntTSL 1 (best) BASIC14.3□□□□□ -0.122e-8■□□□□ 8.8
YBX3P16989 ADAM10-214ENST00000559053 541 ntTSL 413.6□□□□□ -0.232e-8■□□□□ 8.8
YBX3P16989 PLEKHA3-204ENST00000461474 528 ntTSL 413.12□□□□□ -0.312e-8■□□□□ 8.8
YBX3P16989 USP39-215ENST00000481409 447 ntTSL 312.09□□□□□ -0.472e-8■□□□□ 8.8
YBX3P16989 ADAM10-201ENST00000260408 11431 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.792e-8■□□□□ 8.8
YBX3P16989 PLEKHA3-201ENST00000234453 13880 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.792e-8■□□□□ 8.8
YBX3P16989 UBE3C-208ENST00000497368 776 ntTSL 27.61□□□□□ -1.192e-8■□□□□ 8.8
YBX3P16989 IK-209ENST00000515592 1964 ntTSL 26.84□□□□□ -1.312e-8■□□□□ 8.8
YBX3P16989 ADAM10-202ENST00000396136 2418 ntTSL 1 (best)6.02□□□□□ -1.452e-8■□□□□ 8.8
YBX3P16989 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC24.8■■□□□ 1.562e-8■□□□□ 8.8
YBX3P16989 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.442e-8■□□□□ 8.8
YBX3P16989 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC23.7■■□□□ 1.382e-8■□□□□ 8.8
YBX3P16989 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.07■■□□□ 1.282e-8■□□□□ 8.8
YBX3P16989 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.982e-8■□□□□ 8.8
YBX3P16989 SUMF2-209ENST00000436782 1683 ntTSL 1 (best)20.67■□□□□ 0.92e-8■□□□□ 8.8
YBX3P16989 SUMF2-211ENST00000438133 1771 ntTSL 1 (best)16.82■□□□□ 0.282e-8■□□□□ 8.8
YBX3P16989 SUMF2-207ENST00000423763 1792 ntTSL 216.56■□□□□ 0.242e-8■□□□□ 8.8
YBX3P16989 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC6.63□□□□□ -1.352e-6■□□□□ 8.8
YBX3P16989 ISYNA1-213ENST00000583534 629 ntTSL 1 (best)27.15■■□□□ 1.943e-9■□□□□ 8.8
YBX3P16989 ISYNA1-205ENST00000578352 592 ntTSL 225.8■■□□□ 1.723e-9■□□□□ 8.8
YBX3P16989 ISYNA1-204ENST00000577916 2148 ntTSL 525.69■■□□□ 1.73e-9■□□□□ 8.8
YBX3P16989 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.33e-9■□□□□ 8.8
YBX3P16989 ISYNA1-211ENST00000582811 2039 ntTSL 222.31■■□□□ 1.163e-9■□□□□ 8.8
YBX3P16989 ISYNA1-208ENST00000581800 627 ntTSL 421.67■■□□□ 1.063e-9■□□□□ 8.8
YBX3P16989 ISYNA1-210ENST00000582770 1654 ntTSL 221.15■□□□□ 0.983e-9■□□□□ 8.8
YBX3P16989 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.57■□□□□ 0.883e-9■□□□□ 8.8
YBX3P16989 ISYNA1-203ENST00000577820 1466 ntTSL 518■□□□□ 0.473e-9■□□□□ 8.8
YBX3P16989 SP1-203ENST00000548560 1061 ntTSL 211.13□□□□□ -0.631e-6■□□□□ 8.8
YBX3P16989 HSD17B11-205ENST00000508413 563 ntTSL 511.17□□□□□ -0.621e-6■□□□□ 8.8
YBX3P16989 KNTC1-202ENST00000377192 1519 ntTSL 26.72□□□□□ -1.333e-11■□□□□ 8.8
YBX3P16989 KNTC1-212ENST00000541466 616 ntTSL 25.35□□□□□ -1.553e-11■□□□□ 8.8
YBX3P16989 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.17□□□□□ -1.743e-11■□□□□ 8.8
YBX3P16989 CDC123-209ENST00000498747 890 ntTSL 317.92■□□□□ 0.461e-6■□□□□ 8.8
Retrieved 100 of 29,075 protein–RNA pairs in 341.3 ms