RNA–Protein interactions for RNA: ENST00000548560.1

SP1-203, Transcript of Sp1 transcription factor, humanhuman

TSL 2

Gene SP1, Length 1,061 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP1-203ENST00000548560 NISCHQ9Y2I1 1504 aa21.02■□□□□ 0.96
SP1-203ENST00000548560 AEBP2Q6ZN18 517 aaPredicted RBP20.92■□□□□ 0.94
SP1-203ENST00000548560 CHIC1Q5VXU3 224 aa20.5■□□□□ 0.87
SP1-203ENST00000548560 CCDC180Q9P1Z9 1646 aa18.78■□□□□ 0.6
SP1-203ENST00000548560 ABCC9O60706 1549 aa18.34■□□□□ 0.53
SP1-203ENST00000548560 PHF23Q9BUL5 403 aaPredicted RBP18.03■□□□□ 0.48
SP1-203ENST00000548560 SENP3Q9H4L4 574 aaPredicted RBP17.8■□□□□ 0.44
SP1-203ENST00000548560 RB1CC1Q8TDY2 1594 aa17.62■□□□□ 0.41
SP1-203ENST00000548560 NACADO15069 1562 aa17.59■□□□□ 0.41
SP1-203ENST00000548560 ZCCHC6Q5VYS8 1495 aaKnown RBP17.53■□□□□ 0.4
SP1-203ENST00000548560 DCAF8L2P0C7V8 631 aa17.53■□□□□ 0.4
SP1-203ENST00000548560 MYO15BQ96JP2 1530 aa17.47■□□□□ 0.39
SP1-203ENST00000548560 DCAF1Q9Y4B6 1507 aa17.41■□□□□ 0.38
SP1-203ENST00000548560 UNC13AQ9UPW8 1703 aa17.3■□□□□ 0.36
SP1-203ENST00000548560 DNAJC5BQ9UF47 199 aa17.29■□□□□ 0.36
SP1-203ENST00000548560 SCRIBQ14160 1630 aa17.1■□□□□ 0.33
SP1-203ENST00000548560 BICRAQ9NZM4 1560 aa17.08■□□□□ 0.32
SP1-203ENST00000548560 PLPPR3Q6T4P5 718 aa17.01■□□□□ 0.31
SP1-203ENST00000548560 PABPN1Q86U42 306 aaKnown RBP eCLIP17■□□□□ 0.31
SP1-203ENST00000548560 SHROOM4Q9ULL8 1493 aa16.9■□□□□ 0.3
SP1-203ENST00000548560 CC2D2AQ9P2K1 1620 aa16.66■□□□□ 0.26
SP1-203ENST00000548560 FOXD1Q16676 465 aa16.63■□□□□ 0.25
SP1-203ENST00000548560 EIF4G1Q04637 1599 aaKnown RBP16.6■□□□□ 0.25
SP1-203ENST00000548560 CECR2Q9BXF3 1484 aa16.52■□□□□ 0.23
SP1-203ENST00000548560 SMARCA4P51532 1647 aa16.35■□□□□ 0.21
SP1-203ENST00000548560 BAZ1AQ9NRL2 1556 aaPredicted RBP16.34■□□□□ 0.21
SP1-203ENST00000548560 SMARCA2P51531 1590 aa16.24■□□□□ 0.19
SP1-203ENST00000548560 ATAD2BQ9ULI0 1458 aa16.19■□□□□ 0.18
SP1-203ENST00000548560 MROH2BQ7Z745 1585 aa16.18■□□□□ 0.18
SP1-203ENST00000548560 PEG3Q9GZU2 1588 aa16.17■□□□□ 0.18
SP1-203ENST00000548560 NCAPD3P42695 1498 aa16.16■□□□□ 0.18
SP1-203ENST00000548560 HMGXB3Q12766 1538 aa16.16■□□□□ 0.18
SP1-203ENST00000548560 BAZ1BQ9UIG0 1483 aaKnown RBP16.11■□□□□ 0.17
SP1-203ENST00000548560 WIZO95785 1651 aa16.07■□□□□ 0.16
SP1-203ENST00000548560 RSF1Q96T23 1441 aaPredicted RBP15.99■□□□□ 0.15
SP1-203ENST00000548560 TOP2AP11388 1531 aaKnown RBP15.9■□□□□ 0.14
SP1-203ENST00000548560 DNAJC5Q9H3Z4 198 aa15.85■□□□□ 0.13
SP1-203ENST00000548560 CUX2O14529 1486 aa15.84■□□□□ 0.13
SP1-203ENST00000548560 LAMC3Q9Y6N6 1575 aa15.81■□□□□ 0.12
SP1-203ENST00000548560 ADRA2BP18089 450 aa15.8■□□□□ 0.12
SP1-203ENST00000548560 NESP48681 1621 aa15.79■□□□□ 0.12
SP1-203ENST00000548560 ERCC6Q03468 1493 aa15.77■□□□□ 0.11
SP1-203ENST00000548560 THOC2Q8NI27 1593 aaKnown RBP15.73■□□□□ 0.11
SP1-203ENST00000548560 KIF21AQ7Z4S6 1674 aa15.7■□□□□ 0.1
SP1-203ENST00000548560 PRDM2Q13029 1718 aa15.69■□□□□ 0.1
SP1-203ENST00000548560 PPP6R1Q9UPN7 881 aa15.69■□□□□ 0.1
SP1-203ENST00000548560 CADPSQ9ULU8 1353 aa15.69■□□□□ 0.1
SP1-203ENST00000548560 PDS5BQ9NTI5 1447 aa15.67■□□□□ 0.1
SP1-203ENST00000548560 CCDC88BA6NC98 1476 aa15.65■□□□□ 0.1
SP1-203ENST00000548560 SUPT5HO00267 1087 aaKnown RBP15.62■□□□□ 0.09
SP1-203ENST00000548560 CFTRP13569 1480 aa15.62■□□□□ 0.09
SP1-203ENST00000548560 CEP164Q9UPV0 1460 aa15.56■□□□□ 0.08
SP1-203ENST00000548560 FANCD2Q9BXW9 1451 aa15.55■□□□□ 0.08
SP1-203ENST00000548560 MSH5O43196 834 aa15.52■□□□□ 0.08
SP1-203ENST00000548560 MRC2Q9UBG0 1479 aa15.52■□□□□ 0.07
SP1-203ENST00000548560 PIAS4Q8N2W9 510 aaPredicted RBP15.5■□□□□ 0.07
SP1-203ENST00000548560 WDR62O43379 1518 aa15.47■□□□□ 0.07
SP1-203ENST00000548560 KCNA4P22459 653 aa15.39■□□□□ 0.05
SP1-203ENST00000548560 URB2Q14146 1524 aaKnown RBP15.38■□□□□ 0.05
SP1-203ENST00000548560 ABCC8Q09428 1581 aa15.33■□□□□ 0.05
SP1-203ENST00000548560 DNMBPQ6XZF7 1577 aa15.33■□□□□ 0.05
SP1-203ENST00000548560 TOPBP1Q92547 1522 aa15.31■□□□□ 0.04
SP1-203ENST00000548560 IFT140Q96RY7 1462 aa15.2■□□□□ 0.02
SP1-203ENST00000548560 POTEDQ86YR6 584 aa15.2■□□□□ 0.02
SP1-203ENST00000548560 EHMT2Q96KQ7 1210 aa15.2■□□□□ 0.02
SP1-203ENST00000548560 CUX1P39880 1505 aa15.2■□□□□ 0.02
SP1-203ENST00000548560 POLA1P09884 1462 aaPredicted RBP15.17■□□□□ 0.02
SP1-203ENST00000548560 FGD5Q6ZNL6 1462 aa15.15■□□□□ 0.02
SP1-203ENST00000548560 TARBP1Q13395 1621 aaKnown RBP15.15■□□□□ 0.02
SP1-203ENST00000548560 BIVM-ERCC5R4GMW8 1640 aa15.14■□□□□ 0.01
SP1-203ENST00000548560 EIF4G3O43432 1585 aaKnown RBP15.13■□□□□ 0.01
SP1-203ENST00000548560 WRNQ14191 1432 aaPredicted RBP eCLIP15.12■□□□□ 0.01
SP1-203ENST00000548560 TOP2BQ02880 1626 aa15.12■□□□□ 0.01
SP1-203ENST00000548560 SYNJ1O43426 1573 aa15.1■□□□□ 0.01
SP1-203ENST00000548560 WDR97A6NE52 1622 aa15.1■□□□□ 0.01
SP1-203ENST00000548560 SOGA1O94964 1423 aa15.09■□□□□ 0.01
SP1-203ENST00000548560 ZNF608Q9ULD9 1512 aaPredicted RBP15.09■□□□□ 0.01
SP1-203ENST00000548560 RAD54L2Q9Y4B4 1467 aa15.08■□□□□ 0.01
SP1-203ENST00000548560 PPP4R3CPQ6ZMV5 832 aa15.04■□□□□ -0
SP1-203ENST00000548560 TRIM41Q8WV44 630 aa15.04■□□□□ -0
SP1-203ENST00000548560 PBRM1Q86U86 1689 aa15.02□□□□□ -0.01
SP1-203ENST00000548560 AQRO60306 1485 aaKnown RBP eCLIP15.01□□□□□ -0.01
SP1-203ENST00000548560 RIMBP3CA6NJZ7 1639 aa15□□□□□ -0.01
SP1-203ENST00000548560 RIMBP3BA6NNM3 1639 aa15□□□□□ -0.01
SP1-203ENST00000548560 RIMBP3Q9UFD9 1639 aa15□□□□□ -0.01
SP1-203ENST00000548560 OSCARQ8IYS5 282 aa15□□□□□ -0.01
SP1-203ENST00000548560 ABCA10Q8WWZ4 1543 aa15□□□□□ -0.01
SP1-203ENST00000548560 ABCA5Q8WWZ7 1642 aa14.98□□□□□ -0.01
SP1-203ENST00000548560 TDRD9Q8NDG6 1382 aaKnown RBP14.98□□□□□ -0.01
SP1-203ENST00000548560 CHD1O14646 1710 aa14.97□□□□□ -0.01
SP1-203ENST00000548560 GAPVD1Q14C86 1478 aa14.95□□□□□ -0.02
SP1-203ENST00000548560 GRIN2BQ13224 1484 aa14.94□□□□□ -0.02
SP1-203ENST00000548560 NCBP3Q53F19 620 aaKnown RBP14.92□□□□□ -0.02
SP1-203ENST00000548560 SNAPC4Q5SXM2 1469 aa14.92□□□□□ -0.02
SP1-203ENST00000548560 MAGI1Q96QZ7 1491 aaPredicted RBP14.92□□□□□ -0.02
SP1-203ENST00000548560 ARHGEF11O15085 1522 aa14.9□□□□□ -0.02
SP1-203ENST00000548560 FBLN2P98095 1184 aa14.85□□□□□ -0.03
SP1-203ENST00000548560 SLC4A1APQ9BWU0 796 aaKnown RBP14.85□□□□□ -0.03
SP1-203ENST00000548560 ERICH3Q5RHP9 1530 aa14.85□□□□□ -0.03
SP1-203ENST00000548560 SYNJ2O15056 1496 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 133 ms