RNA–Protein interactions for RNA: ENST00000540128.1

TRIM65-202, Transcript of tripartite motif containing 65, humanhuman

TSL 3

Gene TRIM65, Length 886 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM65-202ENST00000540128 NISCHQ9Y2I1 1504 aa53.29■■■■■ 6.12
TRIM65-202ENST00000540128 CCDC180Q9P1Z9 1646 aa47.21■■■■■ 5.15
TRIM65-202ENST00000540128 ABCC9O60706 1549 aa46■■■■■ 4.95
TRIM65-202ENST00000540128 ZCCHC6Q5VYS8 1495 aaKnown RBP44.41■■■■■ 4.7
TRIM65-202ENST00000540128 NACADO15069 1562 aa44.41■■■■■ 4.7
TRIM65-202ENST00000540128 DCAF8L2P0C7V8 631 aa44.39■■■■■ 4.7
TRIM65-202ENST00000540128 RB1CC1Q8TDY2 1594 aa44.35■■■■■ 4.69
TRIM65-202ENST00000540128 MYO15BQ96JP2 1530 aa44.29■■■■■ 4.68
TRIM65-202ENST00000540128 DCAF1Q9Y4B6 1507 aa44.15■■■■■ 4.66
TRIM65-202ENST00000540128 UNC13AQ9UPW8 1703 aa43.27■■■■■ 4.52
TRIM65-202ENST00000540128 PABPN1Q86U42 306 aaKnown RBP eCLIP43.07■■■■■ 4.49
TRIM65-202ENST00000540128 SCRIBQ14160 1630 aa43.04■■■■■ 4.48
TRIM65-202ENST00000540128 BICRAQ9NZM4 1560 aa43.03■■■■■ 4.48
TRIM65-202ENST00000540128 SHROOM4Q9ULL8 1493 aa42.65■■■■■ 4.42
TRIM65-202ENST00000540128 DNAJC5BQ9UF47 199 aa42.15■■■■■ 4.34
TRIM65-202ENST00000540128 EIF4G1Q04637 1599 aaKnown RBP41.86■■■■■ 4.29
TRIM65-202ENST00000540128 CC2D2AQ9P2K1 1620 aa41.62■■■■■ 4.25
TRIM65-202ENST00000540128 CECR2Q9BXF3 1484 aa41.48■■■■■ 4.23
TRIM65-202ENST00000540128 BAZ1AQ9NRL2 1556 aaPredicted RBP41.26■■■■■ 4.2
TRIM65-202ENST00000540128 SMARCA4P51532 1647 aa41.25■■■■■ 4.19
TRIM65-202ENST00000540128 MROH2BQ7Z745 1585 aa41.05■■■■■ 4.16
TRIM65-202ENST00000540128 ATAD2BQ9ULI0 1458 aa41.04■■■■■ 4.16
TRIM65-202ENST00000540128 NCAPD3P42695 1498 aa41.03■■■■■ 4.16
TRIM65-202ENST00000540128 SMARCA2P51531 1590 aa40.97■■■■■ 4.15
TRIM65-202ENST00000540128 PEG3Q9GZU2 1588 aa40.91■■■■■ 4.14
TRIM65-202ENST00000540128 HMGXB3Q12766 1538 aa40.77■■■■■ 4.12
TRIM65-202ENST00000540128 RSF1Q96T23 1441 aaPredicted RBP40.71■■■■■ 4.11
TRIM65-202ENST00000540128 BAZ1BQ9UIG0 1483 aaKnown RBP40.66■■■■■ 4.1
TRIM65-202ENST00000540128 WIZO95785 1651 aa40.56■■■■■ 4.08
TRIM65-202ENST00000540128 TOP2AP11388 1531 aaKnown RBP40.18■■■■■ 4.02
TRIM65-202ENST00000540128 NESP48681 1621 aa39.87■■■■□ 3.97
TRIM65-202ENST00000540128 CADPSQ9ULU8 1353 aa39.84■■■■□ 3.97
TRIM65-202ENST00000540128 LAMC3Q9Y6N6 1575 aa39.82■■■■□ 3.97
TRIM65-202ENST00000540128 SUPT5HO00267 1087 aaKnown RBP39.76■■■■□ 3.96
TRIM65-202ENST00000540128 CCDC88BA6NC98 1476 aa39.75■■■■□ 3.95
TRIM65-202ENST00000540128 CFTRP13569 1480 aa39.63■■■■□ 3.94
TRIM65-202ENST00000540128 ERCC6Q03468 1493 aa39.62■■■■□ 3.93
TRIM65-202ENST00000540128 PDS5BQ9NTI5 1447 aa39.6■■■■□ 3.93
TRIM65-202ENST00000540128 KIF21AQ7Z4S6 1674 aa39.33■■■■□ 3.89
TRIM65-202ENST00000540128 FANCD2Q9BXW9 1451 aa39.31■■■■□ 3.88
TRIM65-202ENST00000540128 CEP164Q9UPV0 1460 aa39.22■■■■□ 3.87
TRIM65-202ENST00000540128 THOC2Q8NI27 1593 aaKnown RBP39.2■■■■□ 3.87
TRIM65-202ENST00000540128 CUX2O14529 1486 aa39.19■■■■□ 3.86
TRIM65-202ENST00000540128 PRDM2Q13029 1718 aa39.17■■■■□ 3.86
TRIM65-202ENST00000540128 MRC2Q9UBG0 1479 aa39.14■■■■□ 3.86
TRIM65-202ENST00000540128 WDR62O43379 1518 aa39■■■■□ 3.83
TRIM65-202ENST00000540128 URB2Q14146 1524 aaKnown RBP38.91■■■■□ 3.82
TRIM65-202ENST00000540128 ABCC8Q09428 1581 aa38.77■■■■□ 3.8
TRIM65-202ENST00000540128 TOPBP1Q92547 1522 aa38.71■■■■□ 3.79
TRIM65-202ENST00000540128 DNMBPQ6XZF7 1577 aa38.66■■■■□ 3.78
TRIM65-202ENST00000540128 CUX1P39880 1505 aa38.49■■■■□ 3.75
TRIM65-202ENST00000540128 IFT140Q96RY7 1462 aa38.44■■■■□ 3.74
TRIM65-202ENST00000540128 POLA1P09884 1462 aaPredicted RBP38.4■■■■□ 3.74
TRIM65-202ENST00000540128 WRNQ14191 1432 aaPredicted RBP eCLIP38.34■■■■□ 3.73
TRIM65-202ENST00000540128 FGD5Q6ZNL6 1462 aa38.31■■■■□ 3.72
TRIM65-202ENST00000540128 SOGA1O94964 1423 aa38.27■■■■□ 3.72
TRIM65-202ENST00000540128 TARBP1Q13395 1621 aaKnown RBP38.26■■■■□ 3.71
TRIM65-202ENST00000540128 ZNF608Q9ULD9 1512 aaPredicted RBP38.22■■■■□ 3.71
TRIM65-202ENST00000540128 RAD54L2Q9Y4B4 1467 aa38.22■■■■□ 3.71
TRIM65-202ENST00000540128 TOP2BQ02880 1626 aa38.2■■■■□ 3.71
TRIM65-202ENST00000540128 BIVM-ERCC5R4GMW8 1640 aa38.17■■■■□ 3.7
TRIM65-202ENST00000540128 SYNJ1O43426 1573 aa38.17■■■■□ 3.7
TRIM65-202ENST00000540128 DNAJC5Q9H3Z4 198 aa38.06■■■■□ 3.68
TRIM65-202ENST00000540128 AQRO60306 1485 aaKnown RBP eCLIP38.04■■■■□ 3.685e-9■■■■■ 37.9
TRIM65-202ENST00000540128 TDRD9Q8NDG6 1382 aaKnown RBP38.03■■■■□ 3.68
TRIM65-202ENST00000540128 ABCA10Q8WWZ4 1543 aa38■■■■□ 3.67
TRIM65-202ENST00000540128 EIF4G3O43432 1585 aaKnown RBP38■■■■□ 3.67
TRIM65-202ENST00000540128 WDR97A6NE52 1622 aa37.98■■■■□ 3.67
TRIM65-202ENST00000540128 GAPVD1Q14C86 1478 aa37.82■■■■□ 3.64
TRIM65-202ENST00000540128 GRIN2BQ13224 1484 aa37.79■■■■□ 3.64
TRIM65-202ENST00000540128 ABCA5Q8WWZ7 1642 aa37.76■■■■□ 3.64
TRIM65-202ENST00000540128 OSCARQ8IYS5 282 aa37.67■■■■□ 3.62
TRIM65-202ENST00000540128 SNAPC4Q5SXM2 1469 aa37.66■■■■□ 3.62
TRIM65-202ENST00000540128 MAGI1Q96QZ7 1491 aaPredicted RBP37.66■■■■□ 3.62
TRIM65-202ENST00000540128 PBRM1Q86U86 1689 aa37.6■■■■□ 3.61
TRIM65-202ENST00000540128 TRIM41Q8WV44 630 aa37.59■■■■□ 3.61
TRIM65-202ENST00000540128 KIF27Q86VH2 1401 aa37.53■■■■□ 3.6
TRIM65-202ENST00000540128 ERICH3Q5RHP9 1530 aa37.53■■■■□ 3.6
TRIM65-202ENST00000540128 FBLN2P98095 1184 aa37.51■■■■□ 3.6
TRIM65-202ENST00000540128 SYNJ2O15056 1496 aa37.51■■■■□ 3.59
TRIM65-202ENST00000540128 CHMP7Q8WUX9 453 aaPredicted RBP37.5■■■■□ 3.59
TRIM65-202ENST00000540128 CHD1O14646 1710 aa37.45■■■■□ 3.59
TRIM65-202ENST00000540128 IGF1RP08069 1367 aa37.42■■■■□ 3.58
TRIM65-202ENST00000540128 FHAD1B1AJZ9 1412 aa37.41■■■■□ 3.58
TRIM65-202ENST00000540128 ADAMTS12P58397 1594 aa37.38■■■■□ 3.57
TRIM65-202ENST00000540128 CHIC1Q5VXU3 224 aa37.32■■■■□ 3.56
TRIM65-202ENST00000540128 GRIN2AQ12879 1464 aa37.28■■■■□ 3.56
TRIM65-202ENST00000540128 RUSC2Q8N2Y8 1516 aa37.23■■■■□ 3.55
TRIM65-202ENST00000540128 CUL7Q14999 1698 aa37.17■■■■□ 3.54
TRIM65-202ENST00000540128 CARMIL1Q5VZK9 1371 aa37.17■■■■□ 3.54
TRIM65-202ENST00000540128 NUP160Q12769 1436 aa37.16■■■■□ 3.54
TRIM65-202ENST00000540128 CLASP1Q7Z460 1538 aa37.15■■■■□ 3.54
TRIM65-202ENST00000540128 CEP170Q5SW79 1584 aa37.04■■■■□ 3.52
TRIM65-202ENST00000540128 EEA1Q15075 1411 aa36.98■■■■□ 3.51
TRIM65-202ENST00000540128 ARHGEF11O15085 1522 aa36.96■■■■□ 3.51
TRIM65-202ENST00000540128 RAPGEF2Q9Y4G8 1499 aa36.94■■■■□ 3.5
TRIM65-202ENST00000540128 CSRNP3Q8WYN3 585 aa36.93■■■■□ 3.5
TRIM65-202ENST00000540128 RIMBP3CA6NJZ7 1639 aa36.9■■■■□ 3.5
TRIM65-202ENST00000540128 RIMBP3BA6NNM3 1639 aa36.9■■■■□ 3.5
TRIM65-202ENST00000540128 RIMBP3Q9UFD9 1639 aa36.9■■■■□ 3.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms