Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC012513.2-201ENST00000441511 1137 ntBASIC14.59□□□□□ -0.07
VCANP13611 RN7SL794P-201ENST00000469816 280 ntBASIC14.59□□□□□ -0.07
VCANP13611 FDPS-220ENST00000611010 1196 ntTSL 5 BASIC14.59□□□□□ -0.07
VCANP13611 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC14.59□□□□□ -0.07
VCANP13611 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VCANP13611 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VCANP13611 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
VCANP13611 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VCANP13611 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VCANP13611 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC14.59□□□□□ -0.07
VCANP13611 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VCANP13611 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VCANP13611 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
VCANP13611 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC14.59□□□□□ -0.07
VCANP13611 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.59□□□□□ -0.07
VCANP13611 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC14.59□□□□□ -0.07
VCANP13611 MNAT1-202ENST00000539616 1220 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VCANP13611 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VCANP13611 AC005332.2-201ENST00000590010 930 ntBASIC14.59□□□□□ -0.07
VCANP13611 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC14.59□□□□□ -0.07
VCANP13611 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VCANP13611 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC14.59□□□□□ -0.07
VCANP13611 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VCANP13611 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.59□□□□□ -0.07
VCANP13611 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
VCANP13611 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.58□□□□□ -0.07
VCANP13611 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC14.58□□□□□ -0.07
VCANP13611 AC069224.1-201ENST00000566372 1715 ntBASIC14.58□□□□□ -0.07
VCANP13611 CTNNBL1-203ENST00000373473 1493 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
VCANP13611 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC14.58□□□□□ -0.07
VCANP13611 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC14.58□□□□□ -0.07
VCANP13611 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
VCANP13611 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 CCND3P1-201ENST00000438347 580 ntBASIC14.58□□□□□ -0.08
VCANP13611 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
VCANP13611 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC14.58□□□□□ -0.08
VCANP13611 BCAR1P1-201ENST00000553953 636 ntBASIC14.58□□□□□ -0.08
VCANP13611 SNORD3B-1-201ENST00000577988 758 ntBASIC14.58□□□□□ -0.08
VCANP13611 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
VCANP13611 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 AC002350.2-201ENST00000623894 1828 ntBASIC14.58□□□□□ -0.08
VCANP13611 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.58□□□□□ -0.08
VCANP13611 LINC01494-201ENST00000419511 1011 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC14.58□□□□□ -0.08
VCANP13611 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC14.58□□□□□ -0.08
VCANP13611 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC14.58□□□□□ -0.08
VCANP13611 AC093300.1-201ENST00000510368 1201 ntBASIC14.58□□□□□ -0.08
VCANP13611 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC14.58□□□□□ -0.08
VCANP13611 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC14.58□□□□□ -0.08
VCANP13611 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
VCANP13611 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC14.58□□□□□ -0.08
VCANP13611 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC14.58□□□□□ -0.08
VCANP13611 BX510359.7-201ENST00000619819 630 ntBASIC14.58□□□□□ -0.08
VCANP13611 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC14.58□□□□□ -0.08
VCANP13611 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VCANP13611 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.58□□□□□ -0.08
VCANP13611 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.58□□□□□ -0.08
VCANP13611 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
VCANP13611 NANOS3-202ENST00000397555 769 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VCANP13611 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC14.57□□□□□ -0.08
VCANP13611 AL049542.1-201ENST00000430231 278 ntBASIC14.57□□□□□ -0.08
VCANP13611 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VCANP13611 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC14.57□□□□□ -0.08
VCANP13611 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VCANP13611 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
VCANP13611 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC14.57□□□□□ -0.08
VCANP13611 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.57□□□□□ -0.08
VCANP13611 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 LINC00265-2P-201ENST00000413372 782 ntBASIC14.57□□□□□ -0.08
VCANP13611 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VCANP13611 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.57□□□□□ -0.08
VCANP13611 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.57□□□□□ -0.08
VCANP13611 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 HDGF-202ENST00000368206 960 ntTSL 5 BASIC14.57□□□□□ -0.08
VCANP13611 AC073210.1-201ENST00000414799 232 ntBASIC14.57□□□□□ -0.08
VCANP13611 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC14.57□□□□□ -0.08
VCANP13611 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VCANP13611 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms