RNA–Protein interactions for RNA: ENST00000620675.4

NEK3-210, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-210ENST00000620675 NISCHQ9Y2I1 1504 aa32.58■■■□□ 2.81
NEK3-210ENST00000620675 CCDC180Q9P1Z9 1646 aa28.76■■■□□ 2.19
NEK3-210ENST00000620675 ABCC9O60706 1549 aa27.89■■■□□ 2.05
NEK3-210ENST00000620675 ZCCHC6Q5VYS8 1495 aaKnown RBP27.22■■□□□ 1.95
NEK3-210ENST00000620675 DCAF8L2P0C7V8 631 aa27.13■■□□□ 1.93
NEK3-210ENST00000620675 NACADO15069 1562 aa26.91■■□□□ 1.9
NEK3-210ENST00000620675 DCAF1Q9Y4B6 1507 aa26.88■■□□□ 1.89
NEK3-210ENST00000620675 RB1CC1Q8TDY2 1594 aa26.87■■□□□ 1.89
NEK3-210ENST00000620675 MYO15BQ96JP2 1530 aa26.82■■□□□ 1.88
NEK3-210ENST00000620675 UNC13AQ9UPW8 1703 aa26.48■■□□□ 1.83
NEK3-210ENST00000620675 SCRIBQ14160 1630 aa26.4■■□□□ 1.82
NEK3-210ENST00000620675 BICRAQ9NZM4 1560 aa26.17■■□□□ 1.78
NEK3-210ENST00000620675 PABPN1Q86U42 306 aaKnown RBP eCLIP26.15■■□□□ 1.788e-7■■□□□ 13.3
NEK3-210ENST00000620675 SHROOM4Q9ULL8 1493 aa26.1■■□□□ 1.77
NEK3-210ENST00000620675 CECR2Q9BXF3 1484 aa25.43■■□□□ 1.66
NEK3-210ENST00000620675 EIF4G1Q04637 1599 aaKnown RBP25.4■■□□□ 1.66
NEK3-210ENST00000620675 DNAJC5BQ9UF47 199 aa25.32■■□□□ 1.64
NEK3-210ENST00000620675 SMARCA4P51532 1647 aa25.23■■□□□ 1.63
NEK3-210ENST00000620675 CC2D2AQ9P2K1 1620 aa25.23■■□□□ 1.63
NEK3-210ENST00000620675 MROH2BQ7Z745 1585 aa25.18■■□□□ 1.62
NEK3-210ENST00000620675 BAZ1AQ9NRL2 1556 aaPredicted RBP25.18■■□□□ 1.62
NEK3-210ENST00000620675 RSF1Q96T23 1441 aaPredicted RBP24.99■■□□□ 1.59
NEK3-210ENST00000620675 WIZO95785 1651 aa24.97■■□□□ 1.59
NEK3-210ENST00000620675 ATAD2BQ9ULI0 1458 aa24.96■■□□□ 1.59
NEK3-210ENST00000620675 PEG3Q9GZU2 1588 aa24.92■■□□□ 1.58
NEK3-210ENST00000620675 SMARCA2P51531 1590 aa24.9■■□□□ 1.58
NEK3-210ENST00000620675 NCAPD3P42695 1498 aa24.84■■□□□ 1.57
NEK3-210ENST00000620675 BAZ1BQ9UIG0 1483 aaKnown RBP24.77■■□□□ 1.56
NEK3-210ENST00000620675 HMGXB3Q12766 1538 aa24.76■■□□□ 1.55
NEK3-210ENST00000620675 SUPT5HO00267 1087 aaKnown RBP24.7■■□□□ 1.54
NEK3-210ENST00000620675 TOP2AP11388 1531 aaKnown RBP24.61■■□□□ 1.53
NEK3-210ENST00000620675 CCDC88BA6NC98 1476 aa24.36■■□□□ 1.49
NEK3-210ENST00000620675 NESP48681 1621 aa24.29■■□□□ 1.48
NEK3-210ENST00000620675 CADPSQ9ULU8 1353 aa24.15■■□□□ 1.46
NEK3-210ENST00000620675 LAMC3Q9Y6N6 1575 aa24.13■■□□□ 1.45
NEK3-210ENST00000620675 CFTRP13569 1480 aa24.1■■□□□ 1.45
NEK3-210ENST00000620675 PRDM2Q13029 1718 aa24.03■■□□□ 1.44
NEK3-210ENST00000620675 KIF21AQ7Z4S6 1674 aa24.02■■□□□ 1.44
NEK3-210ENST00000620675 ERCC6Q03468 1493 aa23.92■■□□□ 1.42
NEK3-210ENST00000620675 PDS5BQ9NTI5 1447 aa23.92■■□□□ 1.42
NEK3-210ENST00000620675 FANCD2Q9BXW9 1451 aa23.91■■□□□ 1.42
NEK3-210ENST00000620675 CEP164Q9UPV0 1460 aa23.82■■□□□ 1.4
NEK3-210ENST00000620675 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
NEK3-210ENST00000620675 MRC2Q9UBG0 1479 aa23.7■■□□□ 1.39
NEK3-210ENST00000620675 URB2Q14146 1524 aaKnown RBP23.7■■□□□ 1.38
NEK3-210ENST00000620675 ABCC8Q09428 1581 aa23.68■■□□□ 1.38
NEK3-210ENST00000620675 WDR62O43379 1518 aa23.63■■□□□ 1.37
NEK3-210ENST00000620675 CUX1P39880 1505 aa23.59■■□□□ 1.37
NEK3-210ENST00000620675 TOPBP1Q92547 1522 aa23.59■■□□□ 1.37
NEK3-210ENST00000620675 DNMBPQ6XZF7 1577 aa23.57■■□□□ 1.36
NEK3-210ENST00000620675 SYNJ1O43426 1573 aa23.53■■□□□ 1.36
NEK3-210ENST00000620675 WRNQ14191 1432 aaPredicted RBP eCLIP23.51■■□□□ 1.35
NEK3-210ENST00000620675 CUX2O14529 1486 aa23.47■■□□□ 1.35
NEK3-210ENST00000620675 BIVM-ERCC5R4GMW8 1640 aa23.45■■□□□ 1.34
NEK3-210ENST00000620675 TOP2BQ02880 1626 aa23.45■■□□□ 1.34
NEK3-210ENST00000620675 POLA1P09884 1462 aaPredicted RBP23.42■■□□□ 1.34
NEK3-210ENST00000620675 FGD5Q6ZNL6 1462 aa23.42■■□□□ 1.34
NEK3-210ENST00000620675 RAD54L2Q9Y4B4 1467 aa23.36■■□□□ 1.33
NEK3-210ENST00000620675 TARBP1Q13395 1621 aaKnown RBP23.33■■□□□ 1.33
NEK3-210ENST00000620675 SOGA1O94964 1423 aa23.29■■□□□ 1.32
NEK3-210ENST00000620675 IFT140Q96RY7 1462 aa23.27■■□□□ 1.32
NEK3-210ENST00000620675 ZNF608Q9ULD9 1512 aaPredicted RBP23.27■■□□□ 1.32
NEK3-210ENST00000620675 WDR97A6NE52 1622 aa23.25■■□□□ 1.31
NEK3-210ENST00000620675 CHIC1Q5VXU3 224 aa23.24■■□□□ 1.31
NEK3-210ENST00000620675 TRIM41Q8WV44 630 aa23.21■■□□□ 1.31
NEK3-210ENST00000620675 TDRD9Q8NDG6 1382 aaKnown RBP23.17■■□□□ 1.3
NEK3-210ENST00000620675 EIF4G3O43432 1585 aaKnown RBP23.17■■□□□ 1.3
NEK3-210ENST00000620675 AQRO60306 1485 aaKnown RBP eCLIP23.17■■□□□ 1.33e-7■■■□□ 19
NEK3-210ENST00000620675 ABCA10Q8WWZ4 1543 aa23.16■■□□□ 1.3
NEK3-210ENST00000620675 ABCA5Q8WWZ7 1642 aa23.09■■□□□ 1.29
NEK3-210ENST00000620675 PBRM1Q86U86 1689 aa23.04■■□□□ 1.28
NEK3-210ENST00000620675 RUSC2Q8N2Y8 1516 aa23.04■■□□□ 1.28
NEK3-210ENST00000620675 GAPVD1Q14C86 1478 aa23.04■■□□□ 1.28
NEK3-210ENST00000620675 KIF27Q86VH2 1401 aa22.95■■□□□ 1.26
NEK3-210ENST00000620675 GRIN2BQ13224 1484 aa22.95■■□□□ 1.26
NEK3-210ENST00000620675 SNAPC4Q5SXM2 1469 aa22.93■■□□□ 1.26
NEK3-210ENST00000620675 ERICH3Q5RHP9 1530 aa22.88■■□□□ 1.25
NEK3-210ENST00000620675 IGF1RP08069 1367 aa22.86■■□□□ 1.25
NEK3-210ENST00000620675 CHD1O14646 1710 aa22.86■■□□□ 1.25
NEK3-210ENST00000620675 FAM9AQ8IZU1 332 aaPredicted RBP22.85■■□□□ 1.25
NEK3-210ENST00000620675 ADAMTS12P58397 1594 aa22.84■■□□□ 1.25
NEK3-210ENST00000620675 MAGI1Q96QZ7 1491 aaPredicted RBP22.83■■□□□ 1.25
NEK3-210ENST00000620675 FBLN2P98095 1184 aa22.78■■□□□ 1.24
NEK3-210ENST00000620675 SYNJ2O15056 1496 aa22.76■■□□□ 1.23
NEK3-210ENST00000620675 CUL7Q14999 1698 aa22.76■■□□□ 1.23
NEK3-210ENST00000620675 FHAD1B1AJZ9 1412 aa22.74■■□□□ 1.23
NEK3-210ENST00000620675 CHMP7Q8WUX9 453 aaPredicted RBP22.72■■□□□ 1.23
NEK3-210ENST00000620675 CARMIL1Q5VZK9 1371 aa22.72■■□□□ 1.23
NEK3-210ENST00000620675 CSRNP3Q8WYN3 585 aa22.7■■□□□ 1.23
NEK3-210ENST00000620675 EEA1Q15075 1411 aa22.7■■□□□ 1.22
NEK3-210ENST00000620675 GRIN2AQ12879 1464 aa22.69■■□□□ 1.22
NEK3-210ENST00000620675 PRXQ9BXM0 1461 aa22.65■■□□□ 1.22
NEK3-210ENST00000620675 CEP170Q5SW79 1584 aa22.62■■□□□ 1.21
NEK3-210ENST00000620675 RAPGEF2Q9Y4G8 1499 aa22.61■■□□□ 1.21
NEK3-210ENST00000620675 EHMT2Q96KQ7 1210 aa22.61■■□□□ 1.21
NEK3-210ENST00000620675 OSCARQ8IYS5 282 aa22.59■■□□□ 1.21
NEK3-210ENST00000620675 NUP160Q12769 1436 aa22.56■■□□□ 1.2
NEK3-210ENST00000620675 KIF21BO75037 1637 aa22.54■■□□□ 1.2
NEK3-210ENST00000620675 CLASP1Q7Z460 1538 aa22.53■■□□□ 1.2
NEK3-210ENST00000620675 CTTNBP2Q8WZ74 1663 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms