Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC16.93■□□□□ 0.3
ERCC3P19447 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ERCC3P19447 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ERCC3P19447 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.92■□□□□ 0.3
ERCC3P19447 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.92■□□□□ 0.3
ERCC3P19447 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
ERCC3P19447 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
ERCC3P19447 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
ERCC3P19447 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.92■□□□□ 0.3
ERCC3P19447 OR2K2-202ENST00000374428 1038 ntBASIC16.92■□□□□ 0.3
ERCC3P19447 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC16.92■□□□□ 0.3
ERCC3P19447 NOC2LP1-201ENST00000450578 752 ntBASIC16.92■□□□□ 0.3
ERCC3P19447 AL035414.1-201ENST00000451327 857 ntBASIC16.92■□□□□ 0.3
ERCC3P19447 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC16.92■□□□□ 0.3
ERCC3P19447 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
ERCC3P19447 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 NEU3-205ENST00000531619 582 ntTSL 5 BASIC16.92■□□□□ 0.3
ERCC3P19447 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC16.92■□□□□ 0.3
ERCC3P19447 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC16.92■□□□□ 0.3
ERCC3P19447 AC007718.1-201ENST00000621078 280 ntBASIC16.92■□□□□ 0.3
ERCC3P19447 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ERCC3P19447 CYP4F23P-201ENST00000593402 1579 ntBASIC16.92■□□□□ 0.3
ERCC3P19447 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC16.92■□□□□ 0.3
ERCC3P19447 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
ERCC3P19447 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.92■□□□□ 0.3
ERCC3P19447 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC16.92■□□□□ 0.3
ERCC3P19447 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
ERCC3P19447 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ERCC3P19447 RAN-210ENST00000541630 1475 ntTSL 2 BASIC16.92■□□□□ 0.3
ERCC3P19447 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.92■□□□□ 0.3
ERCC3P19447 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
ERCC3P19447 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
ERCC3P19447 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
ERCC3P19447 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.91■□□□□ 0.3
ERCC3P19447 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
ERCC3P19447 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC16.91■□□□□ 0.3
ERCC3P19447 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.91■□□□□ 0.3
ERCC3P19447 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
ERCC3P19447 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC16.91■□□□□ 0.3
ERCC3P19447 AL627231.1-201ENST00000394467 1125 ntBASIC16.91■□□□□ 0.3
ERCC3P19447 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC16.91■□□□□ 0.3
ERCC3P19447 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC16.91■□□□□ 0.3
ERCC3P19447 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC16.91■□□□□ 0.3
ERCC3P19447 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.91■□□□□ 0.3
ERCC3P19447 WDR7-208ENST00000589935 544 ntTSL 4 BASIC16.91■□□□□ 0.3
ERCC3P19447 AP003419.4-201ENST00000616071 517 ntBASIC16.91■□□□□ 0.3
ERCC3P19447 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.91■□□□□ 0.3
ERCC3P19447 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.91■□□□□ 0.3
ERCC3P19447 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC3P19447 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
ERCC3P19447 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC3P19447 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC16.9■□□□□ 0.3
ERCC3P19447 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC3P19447 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC3P19447 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
ERCC3P19447 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
ERCC3P19447 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC3P19447 ACE3P-201ENST00000423435 1973 ntBASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms