Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL18A1P39060 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC18.53■□□□□ 0.56
COL18A1P39060 MIR4326-201ENST00000582203 59 ntBASIC18.53■□□□□ 0.56
COL18A1P39060 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC18.53■□□□□ 0.56
COL18A1P39060 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC18.53■□□□□ 0.56
COL18A1P39060 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL18A1P39060 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL18A1P39060 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC18.53■□□□□ 0.56
COL18A1P39060 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC18.53■□□□□ 0.56
COL18A1P39060 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
COL18A1P39060 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.53■□□□□ 0.56
COL18A1P39060 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL18A1P39060 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL18A1P39060 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL18A1P39060 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
COL18A1P39060 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL18A1P39060 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL18A1P39060 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC18.53■□□□□ 0.56
COL18A1P39060 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC18.53■□□□□ 0.56
COL18A1P39060 AC023141.7-201ENST00000430646 407 ntBASIC18.53■□□□□ 0.56
COL18A1P39060 AC133141.1-201ENST00000443015 339 ntBASIC18.53■□□□□ 0.56
COL18A1P39060 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC18.53■□□□□ 0.56
COL18A1P39060 SRP14-208ENST00000560773 468 ntTSL 3 BASIC18.53■□□□□ 0.56
COL18A1P39060 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC18.53■□□□□ 0.56
COL18A1P39060 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC18.53■□□□□ 0.56
COL18A1P39060 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC18.53■□□□□ 0.56
COL18A1P39060 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC18.53■□□□□ 0.56
COL18A1P39060 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL18A1P39060 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
COL18A1P39060 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL18A1P39060 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL18A1P39060 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
COL18A1P39060 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL18A1P39060 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL18A1P39060 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.52■□□□□ 0.56
COL18A1P39060 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL18A1P39060 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.52■□□□□ 0.56
COL18A1P39060 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL18A1P39060 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL18A1P39060 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL18A1P39060 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
COL18A1P39060 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL18A1P39060 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
COL18A1P39060 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC18.52■□□□□ 0.56
COL18A1P39060 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL18A1P39060 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
COL18A1P39060 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.55
COL18A1P39060 RPSAP6-201ENST00000417882 882 ntBASIC18.52■□□□□ 0.55
COL18A1P39060 FDPSP7-201ENST00000429043 1054 ntBASIC18.52■□□□□ 0.55
COL18A1P39060 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC18.52■□□□□ 0.55
COL18A1P39060 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC18.52■□□□□ 0.55
COL18A1P39060 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC18.52■□□□□ 0.55
COL18A1P39060 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.55
COL18A1P39060 HNRNPA1P56-201ENST00000505767 954 ntBASIC18.52■□□□□ 0.55
COL18A1P39060 RNA5SP420-201ENST00000516997 137 ntBASIC18.52■□□□□ 0.55
COL18A1P39060 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC18.52■□□□□ 0.55
COL18A1P39060 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC18.52■□□□□ 0.55
COL18A1P39060 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC18.52■□□□□ 0.55
COL18A1P39060 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC18.52■□□□□ 0.55
COL18A1P39060 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC18.52■□□□□ 0.55
COL18A1P39060 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL18A1P39060 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL18A1P39060 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.55
COL18A1P39060 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL18A1P39060 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC18.52■□□□□ 0.55
COL18A1P39060 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
COL18A1P39060 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC18.51■□□□□ 0.55
COL18A1P39060 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL18A1P39060 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC18.51■□□□□ 0.55
COL18A1P39060 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 RPL18AP16-201ENST00000424057 531 ntBASIC18.51■□□□□ 0.55
COL18A1P39060 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC18.51■□□□□ 0.55
COL18A1P39060 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC18.51■□□□□ 0.55
COL18A1P39060 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC18.51■□□□□ 0.55
COL18A1P39060 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL18A1P39060 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.51■□□□□ 0.55
COL18A1P39060 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC18.51■□□□□ 0.55
COL18A1P39060 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL18A1P39060 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC18.51■□□□□ 0.55
COL18A1P39060 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 AC023824.1-201ENST00000562945 2975 ntBASIC18.51■□□□□ 0.55
COL18A1P39060 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC18.51■□□□□ 0.55
COL18A1P39060 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 FES-203ENST00000394302 2133 ntTSL 5 BASIC18.51■□□□□ 0.55
COL18A1P39060 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL18A1P39060 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
COL18A1P39060 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC18.5■□□□□ 0.55
COL18A1P39060 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
COL18A1P39060 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms