Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
LRFN1Q9P244 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 CMC1-204ENST00000423894 549 ntTSL 2 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
LRFN1Q9P244 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 RNA5SP423-201ENST00000517127 109 ntBASIC13.44□□□□□ -0.26
LRFN1Q9P244 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 FGFR3P5-201ENST00000564496 886 ntBASIC13.44□□□□□ -0.26
LRFN1Q9P244 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
LRFN1Q9P244 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
LRFN1Q9P244 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
LRFN1Q9P244 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
LRFN1Q9P244 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
LRFN1Q9P244 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
LRFN1Q9P244 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
LRFN1Q9P244 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.44□□□□□ -0.26
LRFN1Q9P244 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 AC018442.1-201ENST00000421439 2061 ntBASIC13.43□□□□□ -0.26
LRFN1Q9P244 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 AC139712.1-201ENST00000378256 1875 ntBASIC13.43□□□□□ -0.26
LRFN1Q9P244 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 PARP8-206ENST00000503665 572 ntTSL 4 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 AC009093.10-201ENST00000641956 1442 ntBASIC13.43□□□□□ -0.26
LRFN1Q9P244 AL590440.2-201ENST00000641973 1595 ntBASIC13.43□□□□□ -0.26
LRFN1Q9P244 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
LRFN1Q9P244 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
LRFN1Q9P244 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LRFN1Q9P244 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
LRFN1Q9P244 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.42□□□□□ -0.26
LRFN1Q9P244 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms