Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 NUS1P3-201ENST00000423502 862 ntBASIC11.31□□□□□ -0.6
HIST1H1AQ02539 AC134915.1-201ENST00000426461 574 ntBASIC11.31□□□□□ -0.6
HIST1H1AQ02539 HLA-K-203ENST00000430151 1046 ntBASIC11.31□□□□□ -0.6
HIST1H1AQ02539 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 RHOA-206ENST00000454011 889 ntTSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 CD81-207ENST00000481687 890 ntTSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 INGX-202ENST00000489074 768 ntBASIC11.31□□□□□ -0.6
HIST1H1AQ02539 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 AC093004.1-201ENST00000508850 424 ntBASIC11.31□□□□□ -0.6
HIST1H1AQ02539 GLI4-203ENST00000517468 963 ntTSL 5 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 AP001582.1-201ENST00000525856 295 ntBASIC11.31□□□□□ -0.6
HIST1H1AQ02539 AC055876.2-201ENST00000531834 546 ntBASIC11.31□□□□□ -0.6
HIST1H1AQ02539 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 NAA60-208ENST00000570819 833 ntTSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 AC005498.2-205ENST00000593218 784 ntBASIC11.31□□□□□ -0.6
HIST1H1AQ02539 AC004790.1-201ENST00000612686 536 ntBASIC11.31□□□□□ -0.6
HIST1H1AQ02539 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 CACNA1G-232ENST00000515411 6960 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HIST1H1AQ02539 HLCS-201ENST00000336648 6010 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 USP47-202ENST00000339865 7775 ntTSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 LSS-211ENST00000522411 2523 ntTSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 C1QBPP1-201ENST00000400117 770 ntBASIC11.3□□□□□ -0.6
HIST1H1AQ02539 MRPS18AP1-201ENST00000414458 589 ntBASIC11.3□□□□□ -0.6
HIST1H1AQ02539 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 AC022447.6-201ENST00000515522 438 ntBASIC11.3□□□□□ -0.6
HIST1H1AQ02539 RNA5SP421-201ENST00000516864 134 ntBASIC11.3□□□□□ -0.6
HIST1H1AQ02539 RFPL4AP1-201ENST00000530883 850 ntBASIC11.3□□□□□ -0.6
HIST1H1AQ02539 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 RRP7BP-205ENST00000566851 833 ntBASIC11.3□□□□□ -0.6
HIST1H1AQ02539 AC120045.2-201ENST00000567334 178 ntBASIC11.3□□□□□ -0.6
HIST1H1AQ02539 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 GPALPP1-207ENST00000611650 899 ntBASIC11.3□□□□□ -0.6
HIST1H1AQ02539 AC006538.3-201ENST00000612495 578 ntBASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms