Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 AC011495.1-201ENST00000498085 584 ntBASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 RPL28-207ENST00000558815 616 ntTSL 2 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 KRT8P24-201ENST00000560290 1559 ntBASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 GREM1-201ENST00000560677 623 ntTSL 4 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 AC015936.2-201ENST00000593177 259 ntBASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 TP73-213ENST00000604479 1623 ntTSL 5 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HIF3AQ9Y2N7 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 RNA5SP486-201ENST00000515961 83 ntBASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 ECM1P1-201ENST00000604092 1279 ntBASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HIF3AQ9Y2N7 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 HSPA8P5-201ENST00000456928 2069 ntBASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms